Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F06
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    38   0.007
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    38   0.007
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    31   0.85 
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    31   0.85 
Z47357-8|CAA87425.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +1

Query: 259 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKK 432
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EKK
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKK 57


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +1

Query: 259 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKK 432
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EKK
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKK 57


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 299 SLRSCSVTARCC-CNVDTIISITAVSERPMLKTKAKXKD*NW-ASPCTRRESPE 144
           S+  CS    C  C++D   S  AV+ +  LKTK   K   W +S    R SPE
Sbjct: 475 SVARCSEQPSCALCSLDPYCSWNAVNSKCSLKTKTNEKSVGWISSSWAGRISPE 528


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 299 SLRSCSVTARCC-CNVDTIISITAVSERPMLKTKAKXKD*NW-ASPCTRRESPE 144
           S+  CS    C  C++D   S  AV+ +  LKTK   K   W +S    R SPE
Sbjct: 475 SVARCSEQPSCALCSLDPYCSWNAVNSKCSLKTKTNEKSVGWISSSWAGRISPE 528


>Z47357-8|CAA87425.3|  601|Caenorhabditis elegans Hypothetical
           protein ZK1128.6a protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +1

Query: 280 TEQLRREAAIKRIPVSVAVSDIIKYINEHEQE----DCLLVGFSSQKVNPFREKKFMYCP 447
           T   +R   +  +  S   S  +K I+E ++E    D  +VG S       R KK + CP
Sbjct: 33  TTDEQRMCGLSELVTSCLTSSRLKAIDEEDEEENCNDIEIVGLSKTTTKVKRSKKVLSCP 92

Query: 448 L 450
           +
Sbjct: 93  I 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,064
Number of Sequences: 27780
Number of extensions: 272752
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)