Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F05
         (906 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   4.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   7.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   7.6  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 144 RHLS*FFCKTFKIMQLKDVNINKKLSSIKFKSN 46
           +H    +C+ FK++Q +D+    ++  ++  SN
Sbjct: 275 KHACSEYCRVFKMLQEEDIFTPDRIPQLEEMSN 307


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 627 TKGAECPLKSLRKKCYLHRRRKRSV 701
           TKG    L +L K C LH    + V
Sbjct: 492 TKGTNKQLNTLNKICALHHHLSKLV 516


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 627 TKGAECPLKSLRKKCYLHRRRKRSV 701
           TKG    L +L K C LH    + V
Sbjct: 217 TKGTNKQLNTLNKICALHHHLSKLV 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,682
Number of Sequences: 336
Number of extensions: 3319
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)