Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F05
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    30   0.39 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    30   0.52 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.52 
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             28   1.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   6.4  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +1

Query: 400 LMEQALDADNAEQTDSALNLYMQAVE-FAVNIKTDDTD-VKTXXXXXXXXXXDRAEQIK- 570
           L++ A+D DNAEQ   A   Y  A++ F + +K +  +  K           DRAE++K 
Sbjct: 13  LVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKV 72

Query: 571 GLKKLNSLSISKPK 612
            L++ N+   SK +
Sbjct: 73  YLQEKNNQISSKSR 86


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 109 FKXFTKKSRQMSDLTNASEAASLAVRFDVAGETEKAAE 222
           FK   K S+     +NAS++  ++V  DVA  TE AA+
Sbjct: 7   FKNLLKHSKSSKGRSNASKSVDVSVNRDVAAYTELAAK 44


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 437 CSALSASNACSIRKKHCCTARSTSAC 360
           C +   ++ CS  KK CCT+   S C
Sbjct: 263 CCSTEKTSCCSQEKKSCCTSEKPSCC 288



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 446 ESVCSALSASNACSIRKKHCCTARSTSAC 360
           +S CS+   S  CS  KK CC+   TS C
Sbjct: 245 KSCCSSKKPS-CCSQEKKGCCSTEKTSCC 272



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 416 NACSIRKKHCCTARSTSAC 360
           + CS  KK CC+++  S C
Sbjct: 238 SCCSQEKKSCCSSKKPSCC 256


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -1

Query: 879 TWXXAXSCGR----SNSQ--IPELASPIISVHWLYPQKVWHIXSLRQINIHER*KAIVVN 718
           TW  A   G     SN+Q  + E AS +I   WL+P   + +  L+ I+       +VV+
Sbjct: 78  TWPGALQIGGGINISNAQNWLQEGASKVIVTSWLFPDAQFDLDRLKAISSKIGKDRLVVD 137

Query: 717 VRC 709
           V C
Sbjct: 138 VSC 140


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 36/162 (22%), Positives = 59/162 (36%)
 Frame = +1

Query: 241  RLLDRIMDRLPPEKQIELRYKVREYLERANLLLEKTDRTQQAEVERAVQQCFFLMEQALD 420
            RL +    R+  E++   +    E   R   LLEK    ++  +  A    FF   Q  +
Sbjct: 692  RLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTKE 751

Query: 421  ADNAEQTDSALNLYMQAVEFAVNIKTDDTDVKTXXXXXXXXXXDRAEQIKGLKKLNSLSI 600
              +   T S L L+ +  +       +D D  +           R   I GLK  N+LS 
Sbjct: 752  GSDGCTTSSQLGLFEKKGDL-----VNDEDKLSSHLLDSVPNALRQAPI-GLKNTNNLS- 804

Query: 601  SKPKNPPKIQREQSVHLKVSGKNAIYTEEEKEVLRTTSNINN 726
               +N        S+    +  N + + E   + RT +N  N
Sbjct: 805  --ERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNSVN 844


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 154 NASEAASLAVRFDVAGETEKAAECYRTAARLLDRIMDRLPPEKQIELRYKVREYL 318
           +A+EA  L +   +A  T+ + E      ++   +  RLP   Q   R  +REY+
Sbjct: 629 HATEAIRLFLTSTLAAATQSSPEVTEEVKKIEASLRKRLPIGFQASYRMLIREYV 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,435
Number of Sequences: 5004
Number of extensions: 55647
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)