Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F05
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 33 0.24
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 32 0.72
01_06_0178 + 27239603-27239789,27240507-27240572,27240668-27240978 31 0.95
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 29 5.1
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 29 5.1
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 6.7
04_04_1244 + 32033492-32033641,32035144-32035200,32035283-320353... 28 8.9
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 8.9
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 28 8.9
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 28 8.9
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 238 ARLLDRIMDRLPPEKQIELRYKVREYLERANLLLEKTDRTQQAEVERAVQQCFFLMEQAL 417
AR R +L + Q++ + + R+YL NLL ++ + QQ + ++ QQ L EQ
Sbjct: 116 ARPSRRARAQLLHQYQLQQQQQHRQYLHSLNLLQQQQQQLQQQQ-QQQQQQMMLLQEQEQ 174
Query: 418 DADNAEQTDSALNLYM 465
+ E D ++ + M
Sbjct: 175 QSPQEEAADDSMVMMM 190
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 31.9 bits (69), Expect = 0.72
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Frame = +1
Query: 265 RLPPEKQIELRYKVREYLERANLLLEKTDRTQQAEVERAVQQCFFLMEQALDADNAEQTD 444
R+ E ++EL ++RE E+ N+L++ + + A + R Q+ F E+ L D +
Sbjct: 616 RVNTEAKVELESRLREACEKENILIKTIEELRHA-LTRQEQEAAF-REERLKRDYDDLQR 673
Query: 445 SALNLYMQAVEFAVNIKTDDTDVKTXXXXXXXXXXDRAEQIKGLKK-LNS-LSISKPKNP 618
+ ++ E + + RAE G+++ LNS L ++ K
Sbjct: 674 RYQSSELRYNELVTQVPESTRPLLRQIEAMQETAARRAEAWAGVERTLNSRLQEAEAKAA 733
Query: 619 PKIQREQSVHLKVSGKNAIYT--EEEKEVLRT 708
++E+SV+ ++S ++ T E + +LRT
Sbjct: 734 AAEEKERSVNERLSQSSSRITVLETQITILRT 765
>01_06_0178 + 27239603-27239789,27240507-27240572,27240668-27240978
Length = 187
Score = 31.5 bits (68), Expect = 0.95
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +1
Query: 568 KGLKKLNSLSISKPKNPPKIQREQSVHLKVSGKN 669
+GLKKLNSL++S+ +N I+R Q++ KVSG+N
Sbjct: 125 EGLKKLNSLTVSQRRN---IKR-QALLTKVSGRN 154
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 280 KQIELRYKVREYLERANLLLEKTDRTQQAEVERAVQQCFFLMEQ 411
+++E K RE +E A L K QAEVE ++C + E+
Sbjct: 214 QRVETERKARELMEEACEELSKEVEEDQAEVEALRRECVSMREE 257
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 229 RTAARLLDRIMDRLPPEKQIELRYKVR 309
R+ R D++ LPPEKQ+E+ Y+ R
Sbjct: 693 RSRKRTPDQVDGSLPPEKQVEVAYEER 719
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 77 LFIFT-SFNCIILXVLQKNQDKCLT*LMHRKLHLLLCVSMSQEKQKKLQNAI 229
L++FT F C++L LQ ++ L+ + +K + +C+ SQ +KLQ +
Sbjct: 1943 LYLFTVKFECVVLHQLQNLEELHLSQIESQKSNKPVCIECSQ-PLRKLQKIV 1993
>04_04_1244 +
32033492-32033641,32035144-32035200,32035283-32035384,
32035716-32035781,32035900-32036001,32036396-32036431
Length = 170
Score = 28.3 bits (60), Expect = 8.9
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = +1
Query: 157 ASEAASLAVRFDVAGETEKAAECYRTAARLLDRIMDRLP--PEKQIELRYK--VREYLER 324
A+ AA + G+ ++ A+ R L R DRLP ++Q+ R + E
Sbjct: 6 AASAAGVEAGAAGGGKDDELADLVRRLVDALARYSDRLPFDLDRQVTCRLLGVILEETTP 65
Query: 325 ANLLLEKTDRTQQAEVERAVQQ-C-FFLMEQALDADNAEQTDSALN 456
L T R EV + + C +LME+ LD ++ E+ SAL+
Sbjct: 66 EELQNHVTVRPSVLEVLLEIAKFCDVYLMERILDDESGEKVLSALS 111
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 481 RIQQLAYKDSVLNLFVLRYQHLTLAPLGKSTVVLHVQL 368
RI K+ V NL VLR+ +L PL + +VQL
Sbjct: 282 RIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQL 319
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 304 VREYLERANLLLEKTDRTQQAEVERAVQQCFFLMEQALDADNAEQTDSALNLYMQAVEFA 483
V + +E N +LEK + E ++A ++A + D E+ SAL + A+
Sbjct: 628 VNKEIELYNSMLEKEGTEGEEEAKKAYMAAREESDKAAEVDEEEKVSSALIEKVDAMLQK 687
Query: 484 VNIKTDDTDVK 516
+ + DD D +
Sbjct: 688 LEKEIDDVDAQ 698
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 385 QQCFFLMEQALDADNAEQTDSALNLYMQAVE-FAVNIKTD-DTDVKTXXXXXXXXXXDRA 558
+Q ++QA+ DN A LYM A+E F ++K + D +K RA
Sbjct: 7 EQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFTEYLRRA 66
Query: 559 EQIKGL 576
E+I+ +
Sbjct: 67 EEIRAV 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,664
Number of Sequences: 37544
Number of extensions: 297651
Number of successful extensions: 802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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