Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F05
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   8.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 525 QICFHICVICFNINCEFNSLHI 460
           +I F +C +CFN+      LHI
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 525 QICFHICVICFNINCEFNSLHI 460
           +I F +C +CFN+      LHI
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHI 430


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 553 RAEQIKGLKKLNSLSISKPKNPPKIQREQ 639
           R ++   LKK+NS  I K    PK+ R+Q
Sbjct: 320 RRKKTVPLKKVNSKYILKSTLTPKLARKQ 348


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 507 CVICFNINCEFNSL 466
           CVIC  + C  NSL
Sbjct: 38  CVICERVYCSRNSL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,318
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)