Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F04
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.18
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 31 1.3
07_01_0080 + 587674-588510 31 1.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.3
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 31 1.3
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 31 1.7
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 2.9
08_02_1256 + 25645085-25645396 30 2.9
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 30 2.9
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 29 3.9
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 5.1
03_06_0599 + 34984869-34985319,34986581-34987563 29 5.1
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.1
01_06_0146 + 26969011-26969995,26970878-26970930 29 5.1
10_08_0638 - 19503580-19503990 29 6.7
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 6.7
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 29 6.7
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 29 6.7
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 29 6.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.9
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 8.9
09_02_0327 - 7284829-7284889,7284946-7286126 28 8.9
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 28 8.9
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 28 8.9
03_01_0515 - 3864796-3865425 28 8.9
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 730 GPPPGGXXKXPXPPPPQKNXPXXPPLXGXGR 822
GPPP K P PPPP K PP G+
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Score = 32.7 bits (71), Expect = 0.41
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPP K PPPP K P PP G
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKG 352
Score = 32.3 bits (70), Expect = 0.55
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 736 PPGGXXKXPXPPPPQKNXPXXPPLXG 813
PP K P PPPP K P PP G
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKG 361
Score = 31.9 bits (69), Expect = 0.72
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPP P PPPP K P PP G
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKG 343
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPPGG P PPPP+ P G
Sbjct: 368 PPPGGKKGGPPPPPPKGGASRPPAAPG 394
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP G K PPPP K PP
Sbjct: 367 PPPPGGKKGGPPPPPPKGGASRPP 390
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +1
Query: 733 PPPGGXXKXPXPPP-PQKNXPXXPPLXG 813
PPP G P PPP +K P PP G
Sbjct: 357 PPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 738 PRGX*XKXXPPPPPKKXPXXPPP 806
P G PPPPPK P PPP
Sbjct: 36 PYGADLSPPPPPPPKPPPTVPPP 58
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
P P G P PPPP K P PP
Sbjct: 34 PDPYGADLSPPPPPPPKPPPTVPP 57
>07_01_0080 + 587674-588510
Length = 278
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPL 807
PP G P PPPP P PPL
Sbjct: 98 PPSSGSPPPPPPPPPPPPPPPPPPL 122
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP P PP
Sbjct: 97 PPPSSGSPPPPPPPPPPPPPPPPP 120
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP P PP
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPP 119
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP P PP
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPPPP 118
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 108 PPPPPPPPPPPPPPLFTR 125
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +3
Query: 207 PXXXPPLGXGXXXPKKKKXXGXXG---PPXXXXPQKXGGXPXXXXXXXXXGPPXPP 365
P PP G P G G PP P+ GG P GPP PP
Sbjct: 1109 PPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP 1164
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
P P K P PPPP K P PP
Sbjct: 220 PEPEPPKKEPPPPPPPKQEPCPPP 243
Score = 30.7 bits (66), Expect = 1.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 765 PPPPPKKXPXXPPP 806
PPPPPK+ P PPP
Sbjct: 231 PPPPPKQEPCPPPP 244
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P P PP+K P PP
Sbjct: 172 PPPPPPAPEPEPEPPKKEEPQPPP 195
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXP----XXPPLXG 813
PPP G + P PPPP N P PP+ G
Sbjct: 297 PPPVGGTQPPPPPPPLANGPPRSIPPPPMTG 327
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPL 807
PPP P PPPP + P PP+
Sbjct: 356 PPPPPPPPPPPPPPPPRPPPPPPPI 380
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP P PP
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPPPPP 378
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 756 KXXPPPPPKKXPXXPPP 806
K PPPPP P PPP
Sbjct: 350 KLMPPPPPPPPPPPPPP 366
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP P PP
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPP 377
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 355 PPPPPPPPPPPPPPPPPR 372
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 627 PSPAPXXXKGPXPXGFSXXXXXXXXXXXXXXXXXGAXPRGX*XKXXPPPPPKKXPXXPPP 806
P+PAP P FS G P PPP + P PPP
Sbjct: 16 PTPAPNPAASSLPASFSNLHVSRAPPPFAPPGGNGPVPSSIRAPQAPPPGARPFPGSPPP 75
>08_02_1256 + 25645085-25645396
Length = 103
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPPQ+ PP
Sbjct: 65 PPPPPLPSPPPPPPPQQQEEQSPP 88
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 736 PPGGXXKXPXPPPPQKNXPXXPPL 807
PP G P PPPP P PP+
Sbjct: 66 PPAGIAVHPSPPPPPPPPPPPPPV 89
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 741 RGX*XKXXPPPPPKKXPXXPPP 806
RG + PPPPP P PPP
Sbjct: 188 RGVLYRVAPPPPPPAAPPPPPP 209
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 197 PPPPPAAPPPPPPPARGR 214
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXGXGR 822
P P K P PPPPQ+ P L G R
Sbjct: 54 PNPNPNPKPPPPPPPQEPEPAKVKLAGRRR 83
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP+ P PPP R
Sbjct: 398 PPPPPQPPPPPPPPPHQR 415
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP+ N PP
Sbjct: 351 PPPPPPPPPPPPPPPKLNTAPKPP 374
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 738 PRGX*XKXXPPPPPKKXPXXPPP 806
PR PPPPP P PPP
Sbjct: 340 PRPVQPSNAPPPPPPPPPPPPPP 362
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPP P PP P + P PP G
Sbjct: 103 PPPAPAPDQPAPPSPPPSLPPSPPAPG 129
>10_08_0638 - 19503580-19503990
Length = 136
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 765 PPPPPKKXPXXPPP 806
PPPP KK P PPP
Sbjct: 116 PPPPRKKPPPQPPP 129
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 765 PPPPPKKXPXXPPP 806
PPPPP+ P PPP
Sbjct: 55 PPPPPRTLPPPPPP 68
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 765 PPPPPKKXPXXPPP 806
PPPPP+ P PPP
Sbjct: 504 PPPPPENEPAPPPP 517
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 756 KXXPPPPPKKXPXXPP 803
K PPPPPK P PP
Sbjct: 589 KSMPPPPPKSMPPPPP 604
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP P PPPP N PP
Sbjct: 75 PPPTPPSPPPPPPPPPTNGTLTPP 98
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/70 (30%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Frame = +1
Query: 628 PPPPXXXXKAPXXXAFXXXXXXXXXXXXXXXXXXGPPP---GGXXKXPXPPPPQK----- 783
PPPP P A PPP G P PPPPQ
Sbjct: 717 PPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPPG 776
Query: 784 NXPXXPPLXG 813
P PPL G
Sbjct: 777 TVPPPPPLHG 786
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 732 AXPRGX*XKXXPPPPPKKXPXXPPP 806
A PRG + PP PK P PPP
Sbjct: 131 ALPRGPGQEPPPPHVPKAAPPPPPP 155
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 53 PPPPPPPPPPPPPPPRGR 70
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 54 PPPPPPPPPPPPPPRGRR 71
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
PPP PPPP + P PP
Sbjct: 41 PPPSPVPSPAPPPPPHRPSPSPPP 64
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 765 PPPPPKKXPXXPPPXXXR 818
PPPPP P PPP R
Sbjct: 54 PPPPPPTQPAPPPPPPAR 71
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQ-KNXPXXPPL 807
PP G P PPPP + P PPL
Sbjct: 63 PPAAGPLMPPPPPPPSVTSSPPPPPL 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,874
Number of Sequences: 37544
Number of extensions: 295297
Number of successful extensions: 4990
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3718
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -