Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F04
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.21
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.21
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.21
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 30 2.0
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 25 2.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.1
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 28 8.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 8.0
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 28 8.0
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 28 8.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQ--KNXPXXPPLXG 813
PPPGG P PPPP K P PP G
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
PGG P + P PP G G PPP GG
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQ--KNXPXXPPLXG 813
PPPGG P PPPP K P PP G
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
PGG P + P PP G G PPP GG
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQ--KNXPXXPPLXG 813
PPPGG P PPPP K P PP G
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
PGG P + P PP G G PPP GG
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 488 GPGGGPXLXPKXPRPPRXGXGXXXXGXAXPPP 583
G GGG P P PP G G G A PPP
Sbjct: 22 GGGGGCGCAPPPP-PPACGCGGGGGGYAAPPP 52
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 25.0 bits (52), Expect(2) = 2.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 805 GGGXXGXFFGGGGGXXF 755
G G G F GGGGG F
Sbjct: 473 GAGGFGSFGGGGGGGGF 489
Score = 23.4 bits (48), Expect(2) = 2.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -2
Query: 664 GXGPFXXXGAGEGXXXXXFXXGSPXFXGGGXGAP 563
G G F G G G F GSP F G P
Sbjct: 485 GGGGFGGGGGGFGGGGGGFGSGSP-FGGAAPSPP 517
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPP P PPPP P P + G
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPG 315
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPLXG 813
PPP P PPPP P P + G
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPG 325
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPL 807
PPP + P PPP+ P PP+
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPM 162
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPPL 807
PPP P PPPP P PP+
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPPM 81
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
P P + P PPR G G PPP GG
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
P P + P PPR G G PPP GG
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 733 PPPGGXXKXPXPPPPQKNXPXXPP 804
P P + P PPPP + P PP
Sbjct: 123 PAPAPYQQQPPPPPPPPHYPPPPP 146
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
P P + P PPR G G PPP GG
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 491 PGGGPXLXPKXPRPPRXGXGXXXXGXAXPPPXKXGG 598
P P + P PPR G G PPP GG
Sbjct: 769 PAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,010,295
Number of Sequences: 27780
Number of extensions: 182335
Number of successful extensions: 2050
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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