Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F03
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720... 221 5e-58
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369... 157 9e-39
03_06_0302 - 32981404-32981538,32981619-32981678,32981800-329818... 36 0.034
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436... 36 0.045
01_06_0095 - 26395104-26395871,26396040-26396486 33 0.42
07_01_0974 + 8211602-8212051 30 2.2
05_01_0030 + 195663-196691 29 6.8
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 29 6.8
03_05_0094 + 20740373-20740948 28 9.0
>09_04_0657 +
19271266-19271388,19271906-19271910,19272005-19272067,
19272150-19272256,19272321-19272418,19273070-19273162,
19273279-19273320,19273464-19273619
Length = 228
Score = 221 bits (541), Expect = 5e-58
Identities = 107/221 (48%), Positives = 154/221 (69%), Gaps = 4/221 (1%)
Frame = +2
Query: 155 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 334
A I PS+L++D + L E+ +++ GAD+LH+D+MDG FVPNLT G PV++ LR K A
Sbjct: 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65
Query: 335 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGTP 511
+ + H+MV P ++ P+A AG + +TFHIE +D E+ + ++ GM+ GV+++PGTP
Sbjct: 66 YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125
Query: 512 VSEVEKYISIS---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPS 682
V EV + ++VL+MTVEPGFGGQKFM M KV+ LR+ YP LDIEVDGG+GPS
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS 185
Query: 683 TINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAIN 805
TI+ A+AGAN IV+G++I G+A+ I LR +V+ + N
Sbjct: 186 TIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQN 226
>03_01_0485 +
3695857-3695951,3696489-3696597,3696746-3696886,
3696986-3697099,3697558-3697636,3698163-3698272,
3698344-3698400,3698520-3698609
Length = 264
Score = 157 bits (382), Expect = 9e-39
Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 6/226 (2%)
Frame = +2
Query: 101 KFFRRKIRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPN 280
K FR + S+ ++ PSIL+A+ S+L E+ + + G D++H+DVMDG+FVPN
Sbjct: 33 KAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPN 92
Query: 281 LTFGHPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVI--EVC 454
+T G VV LR + D + H+M+ +PEQ + AG + + H E +
Sbjct: 93 ITIGPLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTV 151
Query: 455 RKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLR- 631
+++ G K GV + P TP++ ++ + + D+VLIM+V PGFGGQ F+E+Q+ K+ LR
Sbjct: 152 NQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRR 211
Query: 632 ---ENYPLLDIEVDGGVGPSTINCCANAGANMIVSGTAIIGSADQA 760
E IEVDGGVGP AGAN IV+G+A+ G+ D A
Sbjct: 212 LCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYA 257
>03_06_0302 -
32981404-32981538,32981619-32981678,32981800-32981877,
32982264-32982341,32982516-32982592,32983271-32983445,
32983532-32983678,32984407-32984496
Length = 279
Score = 36.3 bits (80), Expect = 0.034
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +2
Query: 395 AGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMVLIMTVEP 574
AGV+ P+++ + + HG+++ + P TP +++ S+ + +
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193
Query: 575 GFGGQKFMENQMAKVQY-LRENYPLLDIEVDGGVGPST---INCCANAGANMIVSGTAII 742
G G + N +V+Y L+E + D V G G ST + A GA+ ++ G+AI+
Sbjct: 194 GVTGAR--SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIV 251
Query: 743 GSADQAAT 766
+AA+
Sbjct: 252 RQLGEAAS 259
>07_01_0587 -
4362843-4362977,4363072-4363131,4363228-4363305,
4363552-4363629,4363950-4364026,4364416-4364590,
4364698-4364844,4365477-4365716
Length = 329
Score = 35.9 bits (79), Expect = 0.045
Identities = 31/135 (22%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Frame = +2
Query: 374 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 553
++T + +AGV+ P+++ + + ++ +++ + P TP +EK S+
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236
Query: 554 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST---INCCANAGANMI 721
+ + G G + N KVQ L ++ + D V G G ST + A GA+ +
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGV 294
Query: 722 VSGTAIIGSADQAAT 766
+ G+A++ +AA+
Sbjct: 295 IIGSAMVRQLGEAAS 309
>01_06_0095 - 26395104-26395871,26396040-26396486
Length = 404
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 739 NWISRPSCYY-KITTKYCTGCNKQYTISDXT 828
NW SRPS +Y K C+ C++QY + D T
Sbjct: 228 NWFSRPSLFYEKRRLVGCSFCSRQYGVPDLT 258
>07_01_0974 + 8211602-8212051
Length = 149
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 768 IVAAWSADPIMAVPETIMLAPALAQQFIVDGPTPPSTSISSNG 640
+ AA A ++ P P L QQF P PPS+ + G
Sbjct: 18 VAAAIVAGLLLLAPAAAQQPPPLVQQFYYYSPPPPSSPVGGGG 60
>05_01_0030 + 195663-196691
Length = 342
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -1
Query: 582 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 421
P P S + ++ + I ++ VP F+A T SLT L S SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/77 (20%), Positives = 37/77 (48%)
Frame = +2
Query: 512 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTIN 691
+ E ++++ +L V GF G + N++ ++ L + LLD E+D G+ +
Sbjct: 188 IEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLD-EIDSGLDVDALE 246
Query: 692 CCANAGANMIVSGTAII 742
A A ++ ++++
Sbjct: 247 YVAKAVNGILTPNSSLM 263
>03_05_0094 + 20740373-20740948
Length = 191
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 662 DGGVGPSTINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAINN 808
DGG G + ANAG G ++G T R+ V + NN
Sbjct: 134 DGGAGRAAAATAANAGDQQRTRGGGLLGCMGSTCTCGSSRNEVVEPSNN 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,070,123
Number of Sequences: 37544
Number of extensions: 446727
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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