Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_F01
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 33 0.42
06_01_0169 - 1346281-1349188,1350069-1350184 32 0.55
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 31 1.7
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 31 1.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 3.9
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 29 6.8
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 29 6.8
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 29 6.8
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 29 6.8
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 32.7 bits (71), Expect = 0.42
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 276 EKLSKLLRLKMNRKHILDRCERLLAPKLKK-DSLLTEAKQCRDKIDLLKLAINQRRSNVD 452
E L K+L+L+ + + +L R + +L K +SL E + +++ L+ +NQ S +D
Sbjct: 441 ELLQKILKLESDNQELLGRVQSVLNEKSNDTESLQGEIAKRDQQVETLENQVNQLCSIID 500
Query: 453 EKKK 464
EK++
Sbjct: 501 EKEQ 504
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 216 DCIKEGNFVHSSMPYSDRYSEKLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTEAKQC 395
DC++E VH + L R+ + +++ R E + + + +S+ EA
Sbjct: 81 DCLEEF-MVHVGNQSLLQQLTNLKDRHRIAVKIRNLKSRLEEVSSRNTRYNSIKMEANNT 139
Query: 396 RDKIDLLKLAINQRRSNVDEKK 461
D+I+ ++ N RSN+DE K
Sbjct: 140 FDEIESMEDVRNHSRSNIDEAK 161
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 315 KHILDRCERLLAPKLKKDSLLTEAKQCRDKIDLLKLAINQRRSNV-DEKKKELSELKTYN 491
K L+ E+ L+ LKKD K ++K+D L I+ + + D + ++L + T +
Sbjct: 316 KQALEEAEKKLS-SLKKDFDPAVYKSLKEKLDETNLEISSMQKKIEDARAQDLESIATVS 374
Query: 492 TEL 500
TEL
Sbjct: 375 TEL 377
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 279 KLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTEAKQCRDKID 410
KL+K L+ K++R H L E+L L+K S L+ RD+ D
Sbjct: 688 KLNKALQFKLDRTHSLAYREKLKEQVLEKQSSLSRIGASRDEND 731
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 408 DLLKLAINQRRSNVDEKKKELSELKTYNTELRLRLPRYQKRVASLGYPFRETE 566
D+L I+ R + VD+ +K ++ ++ N L L Y VASL R E
Sbjct: 2285 DMLMKEISSRDAYVDDLQKRVASMRGENAGLMAELAAYLPLVASLSDQIRALE 2337
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 246 SSMPYSDRYSEKLSKLLRLKMNRKHILDRCERLLAPKLKKDS-LLTEAKQCRDKIDLLKL 422
SS PY D+ +S +K +R+H L + + APK +++ L + K +ID L
Sbjct: 379 SSSPYGDKRLHGISNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATL 438
Query: 423 AINQRR 440
+ ++
Sbjct: 439 SAQSKQ 444
>05_07_0116 - 27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 297 RLKMNRKHILDRCERLLAP-KLKKDSLLTEAKQCRDKIDLLKLAINQRRSNVDEKKKELS 473
RL M R +++R ER + + +K+ +L E ++ ++ VDE++KE+
Sbjct: 818 RLAMERLALIERMERQVEGLEREKNKMLEEIERVGQSEKDAVCKVSSLEQRVDEREKEID 877
Query: 474 ELKTYNTELR 503
E+ + + R
Sbjct: 878 EMMQRSNQQR 887
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 28.7 bits (61), Expect = 6.8
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Frame = +3
Query: 264 DRYSEKLSKLLRLKMNRK---HILDRCERLLAPKLKKDSLLTEAKQCRDKIDLLKLAINQ 434
D E++ L R ++ + H L++ E+ A K + + E RDK+ L + +
Sbjct: 409 DSQPEEIDNLERKRIQLEVEHHALEK-EKDKASKARLVEVKKELDDLRDKLQPLTMKYRK 467
Query: 435 RRSNVDEKKKELSELKTYNTELRLRLPRYQK-----RVASLGY-PFRETEIGIA 578
+ +DE +K LK EL+ L ++ RVA L Y +E ++ IA
Sbjct: 468 EKERIDEIRK----LKQRREELQFTLQEAERRMDLARVADLKYGALQEIDVAIA 517
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 381 EAKQCRDKIDLLKLAINQRRSNVDEKKKELSELKTYNTELRLRLPRYQKRVASL 542
E K RDKI+ L+ + + N++ KKE +L+ ++ + L + +++L
Sbjct: 387 EKKTMRDKIEYLETQNKELKMNIESCKKEYLDLEEAHSRANISLKEKEFIISNL 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,850,558
Number of Sequences: 37544
Number of extensions: 426082
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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