Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_F01
         (912 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    30   0.085
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   3.2  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   3.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   4.2  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 30.3 bits (65), Expect = 0.085
 Identities = 15/69 (21%), Positives = 37/69 (53%)
 Frame = +3

Query: 360  KKDSLLTEAKQCRDKIDLLKLAINQRRSNVDEKKKELSELKTYNTELRLRLPRYQKRVAS 539
            ++  L  EA + R++++ +KLAI +        KKE+  L+    E +++   +++ + +
Sbjct: 957  ERTQLEEEANKLREELEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRLEFEQILQT 1016

Query: 540  LGYPFRETE 566
            +    +ET+
Sbjct: 1017 IETKLQETK 1025


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +3

Query: 276 EKLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTE-AKQCRDKIDLLKLAINQRRSNVD 452
           E+LSK  + KM  K    +C+ L A  +  D    +  + CR  I+ L   ++Q+R  V 
Sbjct: 661 EQLSKYQQTKMKVKRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQL---LDQQRRKVA 717

Query: 453 EKKKELSELKTYN-TELRLRL 512
             ++  +  + ++  E R+RL
Sbjct: 718 ALERYAAASREHDLLEQRIRL 738


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 TEAKQCRDKIDLLKLAINQRRSNVDEKKKELSELKTYNTE 497
           TEA QC+D +   +  +++ R  +DE+++ L + +    E
Sbjct: 811 TEANQCQDLLQQAQYHVSRAR-KIDEEERSLRQKQELERE 849


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 551 WVPQTXYPFLISWKP 507
           WV QT Y + + W+P
Sbjct: 75  WVEQTWYDYKLKWEP 89


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 872,277
Number of Sequences: 2352
Number of extensions: 17462
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98814789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)