Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E24
         (899 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61234-1|AAB17539.1|  346|Homo sapiens cofactor C protein.             33   1.4  
BT007002-1|AAP35648.1|  346|Homo sapiens tubulin-specific chaper...    33   1.4  
BC020170-1|AAH20170.1|  346|Homo sapiens tubulin folding cofacto...    33   1.4  
BC017479-1|AAH17479.1|  346|Homo sapiens TBCC protein protein.         33   1.4  
AL353716-1|CAI14818.1|  346|Homo sapiens tubulin folding cofacto...    33   1.9  

>U61234-1|AAB17539.1|  346|Homo sapiens cofactor C protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 565 TSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVXACDENEDYFSGSFKIKSEYVE 744
           T  +E   D   V ERL RR+ +R  ++++  + R+      EN  +F  +F  +   VE
Sbjct: 13  TGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVE 72

Query: 745 DL 750
           +L
Sbjct: 73  EL 74


>BT007002-1|AAP35648.1|  346|Homo sapiens tubulin-specific chaperone
           c protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 565 TSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVXACDENEDYFSGSFKIKSEYVE 744
           T  +E   D   V ERL RR+ +R  ++++  + R+      EN  +F  +F  +   VE
Sbjct: 13  TGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVE 72

Query: 745 DL 750
           +L
Sbjct: 73  EL 74


>BC020170-1|AAH20170.1|  346|Homo sapiens tubulin folding cofactor C
           protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 565 TSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVXACDENEDYFSGSFKIKSEYVE 744
           T  +E   D   V ERL RR+ +R  ++++  + R+      EN  +F  +F  +   VE
Sbjct: 13  TGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVE 72

Query: 745 DL 750
           +L
Sbjct: 73  EL 74


>BC017479-1|AAH17479.1|  346|Homo sapiens TBCC protein protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 565 TSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVXACDENEDYFSGSFKIKSEYVE 744
           T  +E   D   V ERL RR+ +R  ++++  + R+      EN  +F  +F  +   VE
Sbjct: 13  TGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVE 72

Query: 745 DL 750
           +L
Sbjct: 73  EL 74


>AL353716-1|CAI14818.1|  346|Homo sapiens tubulin folding cofactor C
           protein.
          Length = 346

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 565 TSIVEKMNDKHSVLERLSRRDAQRLEKLQKAHKAREEVXACDENEDYFSGSFKIKSEYVE 744
           T  +E   D   V ERL RR+ +R  ++++  + R+      EN  +F  +F  +   VE
Sbjct: 13  TGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFVRERAAVE 72

Query: 745 DL 750
           +L
Sbjct: 73  EL 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,875,296
Number of Sequences: 237096
Number of extensions: 2059913
Number of successful extensions: 4847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4845
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)