Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E24
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 529 SCQPKFRIEPKDTSIVEKMNDKHSV 603
           +CQP   +EP  TS V +  D H V
Sbjct: 112 TCQPSIPLEPDFTSDVTE-RDNHLV 135


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 CGNF*LKRLXPWLHFLQKL 81
           CGNF  + L PW+   +++
Sbjct: 131 CGNFPPRPLGPWISIQEQI 149


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 CGNF*LKRLXPWLHFLQKL 81
           CGNF  + L PW+   +++
Sbjct: 131 CGNFPPRPLGPWISIQEQI 149


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 CGNF*LKRLXPWLHFLQKL 81
           CGNF  + L PW+   +++
Sbjct: 131 CGNFPPRPLGPWISIQEQI 149


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 CGNF*LKRLXPWLHFLQKL 81
           CGNF  + L PW+   +++
Sbjct: 131 CGNFPPRPLGPWISIQEQI 149


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 137 CGNF*LKRLXPWLHFLQKL 81
           CGNF  + + PW+   +++
Sbjct: 371 CGNFPPRSMEPWISMQEQI 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,786
Number of Sequences: 438
Number of extensions: 4497
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)