Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E20
(973 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.061
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.061
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.99
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.061
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 622 APXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPP 747
AP + P PP PP VP PP P P G PP PPP
Sbjct: 1698 APPQMSAPTPPPPPMS-VPPPPSAPPM--PAG--PPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.75
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +1
Query: 598 GVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPP-PGGXXRCP 768
G+ P P + P APP P PP P V PP PP P G P
Sbjct: 1680 GMAPAHPVSTP-PVRPQSAAPPQMSAPTPPP-----PPMSVPPPPSAPPMPAGPPSAP 1731
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.061
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +1
Query: 649 PPAPPXQXVPXP---PXXGPXGAPXGVXPPXKXPPPG 750
PP PP VP P P P AP PP PPPG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +1
Query: 607 PXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPP 747
P P P P PP + PP P G PP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 625 PXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPP 744
P P PP P P PP P A G PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +1
Query: 556 PXGGPXTXXRPGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXK 735
P P P P P P G A PP PP P PP G+ P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAVSAGGSRYYAPAPQA 799
Query: 736 XPPP 747
P P
Sbjct: 800 EPEP 803
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 582 PAXXXGXXPXXAPGPPGXXPPXXSGPPGXAGXXXPXXGPP 701
P P P P PP PPG AG P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.99
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +1
Query: 586 PGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPP 747
P P AP + PPA P V PP + PP PPP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Frame = +1
Query: 616 PXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXP-PXKXPPP 747
P P P APP +P P P P P PPP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +1
Query: 583 RPGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGA---PXGVXP-PXKXPPP 747
RP P A P P + P P P P A P V P P K PPP
Sbjct: 146 RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/67 (26%), Positives = 23/67 (34%)
Frame = +1
Query: 547 SXRPXGGPXTXXRPGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXP 726
S P P + + P P + A PP PP + P G AP + P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP-LPP 471
Query: 727 PXKXPPP 747
PPP
Sbjct: 472 AAPAPPP 478
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +1
Query: 616 PXAPXGXAXPX--PPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPPGGXXRCP 768
P P + P PP+ P P P P P P P P G P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Score = 25.8 bits (54), Expect = 9.2
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +1
Query: 541 PVSXRPXGGPXTXXRPGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAP-XG 717
P S R G P + P P A P P + P PP P AP G
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP--PRSAPSTG 373
Query: 718 VXPP 729
PP
Sbjct: 374 RQPP 377
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = +1
Query: 586 PGXXGVXPXXPXAPXGXAXPXP---PAPPXQXVPXPPXXGPXGAPXGVXPPXKXPP 744
P G P + P P P P V PP P GAP P PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +1
Query: 586 PGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPPG 750
P P P P P PP VP P P P PP P G
Sbjct: 1172 PAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Score = 27.1 bits (57), Expect = 4.0
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Frame = +1
Query: 541 PVSXRPXGGPXTXXRPGXXGVXPXXPXAPX----GXAXPXPPAP------PXQXVPXPPX 690
P P G P G V AP A P PAP P V PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 691 XGPXGAPXGVXPPXKXPP 744
P GAP P PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPP 1151
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 607 PXXPXAPXGXAXPXPPAP-PXQXVPXPPXXGPXGAPXGVXPPXKXPP 744
P P + G PP P P +P P P GAP V P PP
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIP--APSGAPP-VPAPSGIPP 1093
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 586 PGXXGVXPXXPXAPXGXAXPXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPP 747
PG P AP G P PP P +P P P G+ P P P
Sbjct: 487 PGTSAPLPPTTFAPPGV--PLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +1
Query: 616 PXAPXGXAXPXPP---APPXQXVPXPPXXGPXGAP-XGVXPPXKXPP 744
P P G + P PP APP VP PP G G P + P PP
Sbjct: 484 PFIP-GTSAPLPPTTFAPPG--VPLPPIPGAPGMPNLNMSQPPMVPP 527
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 743 GGXXXGGXTPXGAPXGPXXGGXGTXXXGGAGGXGXAXPXGAXGXXG 606
GG G P G GP G G GG G P G G G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -3
Query: 767 GHRXXPPGGGXXXGGXTPXGAPXGPXXGGXGTXXXGGAGGXGXAXPXGAXG 615
GH G G GG P G GP G G GG G P G G
Sbjct: 222 GHGGFGGGPGGFEGG--PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 5.3
Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Frame = -3
Query: 767 GHRXXPPGG-GXXXGGXTPXGAPXGPXXG-GXGTXXXGGAGGXGXAXPXGAXGXXGXTPX 594
GH GG G GG P G G G GG GG G P G G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG-GGPGGFEGGPGGFGG 242
Query: 593 XPG 585
PG
Sbjct: 243 GPG 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,532
Number of Sequences: 5004
Number of extensions: 20919
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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