Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E20
         (973 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
 Frame = +1

Query: 661 PXQXVPXP---PXXGPXGAPXGVXP-PXKXPPPGGXXRCP 768
           P    P P   P   P     G  P P + PPPGG    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 649 PPAPPXQXVPXPPXXGPXGAPXGVXPPXKXP 741
           P AP     P P    P G P G  PP + P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGA-PPSQNP 60



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = -1

Query: 709 GPXGGPXXGXXXPAXPGGPEXXGGXXPGG-PGAXXGKXP 596
           GP   P      P     P    G  PGG PGA   + P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +1

Query: 643 PXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPPGGXXRCP 768
           P PP P           G  G      P  + PP     RCP
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCP 481


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +1

Query: 643 PXPPAPPXQXVPXPPXXGPXGAPXGVXPPXKXPPPGGXXRCP 768
           P PP P           G  G      P  + PP     RCP
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCP 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,350
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)