Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E19
(906 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X97668-1|CAA66258.1| 815|Homo sapiens XLRP3 protein. 38 0.050
U57629-1|AAC50481.1| 815|Homo sapiens retinitis pigmentosa GTPa... 38 0.050
BC031624-1|AAH31624.1| 480|Homo sapiens RPGR protein protein. 38 0.050
AL606748-2|CAI95407.1| 815|Homo sapiens retinitis pigmentosa GT... 38 0.050
AK223491-1|BAD97211.1| 815|Homo sapiens retinitis pigmentosa GT... 38 0.050
AJ318463-1|CAC86116.1| 815|Homo sapiens retinitis pigmentosa GT... 38 0.050
AJ238395-1|CAB54002.1| 646|Homo sapiens RPGR protein protein. 38 0.050
AF225407-1|AAO27483.1| 409|Homo sapiens HERC2 protein. 32 2.5
AF071172-1|AAD08657.1| 4834|Homo sapiens HERC2 protein. 32 2.5
U50078-1|AAD12586.1| 4861|Homo sapiens p532 protein. 31 5.7
AF224249-1|AAO27475.1| 328|Homo sapiens HERC2 protein. 31 5.7
>X97668-1|CAA66258.1| 815|Homo sapiens XLRP3 protein.
Length = 815
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>U57629-1|AAC50481.1| 815|Homo sapiens retinitis pigmentosa GTPase
regulator protein.
Length = 815
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>BC031624-1|AAH31624.1| 480|Homo sapiens RPGR protein protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>AL606748-2|CAI95407.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 815
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>AK223491-1|BAD97211.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator variant protein.
Length = 815
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>AJ318463-1|CAC86116.1| 815|Homo sapiens retinitis pigmentosa
GTPase regulator protein.
Length = 815
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>AJ238395-1|CAB54002.1| 646|Homo sapiens RPGR protein protein.
Length = 646
Score = 37.9 bits (84), Expect = 0.050
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
I+D GL+YT G+ RH KL L + T N + P + IV VACGGC +
Sbjct: 310 ITDIGLMYTFGDGRHGKLGLGLENFT-------NHFIPTLCSNFLRFIVKLVACGGCHMV 362
Query: 286 LXA 294
+ A
Sbjct: 363 VFA 365
>AF225407-1|AAO27483.1| 409|Homo sapiens HERC2 protein.
Length = 409
Score = 32.3 bits (70), Expect = 2.5
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +1
Query: 118 GLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACG 270
G LYT G+ R+ +L D +D Q PK V A+ GH V +ACG
Sbjct: 14 GDLYTWGKGRYGRLGHSDSED---------QLKPKLVEALQGHRVVDIACG 55
>AF071172-1|AAD08657.1| 4834|Homo sapiens HERC2 protein.
Length = 4834
Score = 32.3 bits (70), Expect = 2.5
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +1
Query: 118 GLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACG 270
G LYT G+ R+ +L D +D Q PK V A+ GH V +ACG
Sbjct: 4110 GDLYTWGKGRYGRLGHSDSED---------QLKPKLVEALQGHRVVDIACG 4151
Score = 31.1 bits (67), Expect = 5.7
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 88 SRXIFRISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVA 264
S+ +F ++ G +Y CGE+ + +L L S VP P+++TA++ ++V VA
Sbjct: 3001 SKSLFAVTVEGKVYACGEATNGRLGLG-----ISSGTVP---IPRQITALSSYVVKKVA 3051
>U50078-1|AAD12586.1| 4861|Homo sapiens p532 protein.
Length = 4861
Score = 31.1 bits (67), Expect = 5.7
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 106 ISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVACGGCXTL 285
++ +G L+T G + +L L + N+ P+RVTA+ G+ + VACG TL
Sbjct: 4149 VTSDGKLFTFGNGDYGRLGLGNTS---------NKKLPERVTALEGYQIGQVACGLNHTL 4199
Query: 286 LXATKXS 306
+ S
Sbjct: 4200 AVSADGS 4206
>AF224249-1|AAO27475.1| 328|Homo sapiens HERC2 protein.
Length = 328
Score = 31.1 bits (67), Expect = 5.7
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 88 SRXIFRISDNGLLYTCGESRHNKLCLDDIDDTNSXXVVPNQYXPKRVTAMNGHIVDXVA 264
S+ +F ++ G +Y CGE+ + +L L S VP P+++TA++ ++V VA
Sbjct: 39 SKSLFAVTVEGKVYACGEATNGRLGLG-----ISSGTVP---IPRQITALSSYVVKKVA 89
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,791,429
Number of Sequences: 237096
Number of extensions: 1300323
Number of successful extensions: 1735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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