Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E17
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    38   0.003
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    36   0.011
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    34   0.033
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    34   0.033
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   6.6  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   8.7  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = +2

Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR---VTEIAKKGGE 280
           +S+ ++   P+ +K +   +PKRP SAY L+  + R +IK E+ G +   V E+ K   E
Sbjct: 97  TSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHE 155

Query: 281 IWKSMK--DKTEWXXXXXXXXXXXXXDLESYNAN 376
            W S+   D+  +             ++ +YNA+
Sbjct: 156 KWGSLSEDDRKTYEEEASKLREAYEEEMAAYNAS 189


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 155 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 295
           K  + PKR MSA+M +    RE++K++NP     ++    G+ WK +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 146 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 292
           K    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 95  KDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 146 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 292
           K    T++  RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 95  KDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
 Frame = -2

Query: 246 KPGFSDFICSLALFN----------HSMYADIGRFGLSVILTFFPDGKNFEIIF 115
           K GFS F+C+  LFN          H MY   GR     +L   P G +   +F
Sbjct: 131 KKGFSRFLCNSPLFNEDKGIKYGSYHQMYRFQGRLVAVGVLDLLPHGVSSVYLF 184


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 339 SLALAAFCSHSVLSFIDFQISP 274
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,167
Number of Sequences: 5004
Number of extensions: 50778
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)