Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E17
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 57 2e-08
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 56 5e-08
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 56 5e-08
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 55 6e-08
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 48 1e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 43 3e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 39 0.004
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 39 0.004
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 39 0.004
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 39 0.004
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 39 0.004
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.013
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.013
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.013
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.013
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.095
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 33 0.22
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 33 0.22
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 29 3.6
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 29 3.6
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 29 3.6
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +2
Query: 128 KFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--D 301
K + GKK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM D
Sbjct: 547 KAVKKGKKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADD 604
Query: 302 KTEWXXXXXXXXXXXXXDLESYNAN 376
K EW +++ Y N
Sbjct: 605 KKEWNDKAAQDKARYEAEMKEYKKN 629
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 55.6 bits (128), Expect = 5e-08
Identities = 27/80 (33%), Positives = 39/80 (48%)
Frame = +2
Query: 128 KFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKT 307
K + G K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+
Sbjct: 14 KRVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKS 71
Query: 308 EWXXXXXXXXXXXXXDLESY 367
W D+ +Y
Sbjct: 72 RWEKKAADDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 55.6 bits (128), Expect = 5e-08
Identities = 27/80 (33%), Positives = 39/80 (48%)
Frame = +2
Query: 128 KFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKT 307
K + G K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+
Sbjct: 14 KRVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKS 71
Query: 308 EWXXXXXXXXXXXXXDLESY 367
W D+ +Y
Sbjct: 72 RWEKKAADDKKRYEVDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 55.2 bits (127), Expect = 6e-08
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 143 GKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWX 316
GKK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +W
Sbjct: 547 GKKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWE 604
Query: 317 XXXXXXXXXXXXDLESYNAN 376
+++ Y N
Sbjct: 605 EKAEEDKSRYEKEMKEYRKN 624
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 48.0 bits (109), Expect = 1e-05
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +2
Query: 53 CSSPIHFFTFSTSTVWLCTSSKIISKFLPSGKKVKMT---DKPKRPMSAYMLWLNSAREQ 223
C P T + T + ++ + S P G V + D KRPM+A+M+W R +
Sbjct: 6 CLYPSLLCTEAAKTSYDEDTTSVSSGLSPPGSPVDLQNSLDHVKRPMNAFMVWSRGQRRK 65
Query: 224 IKSENPGLRVTEIAKKGGEIWKSMKDK 304
+ +NP + +EI+K+ G WK + ++
Sbjct: 66 MAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 155 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 304
K D+ KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 155 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 304
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
++ + S+ + K + KRPM+A+M+W R +I P + + I+K G WK
Sbjct: 158 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 217
Query: 290 SMKD 301
M +
Sbjct: 218 GMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
++ + S+ + K + KRPM+A+M+W R +I P + + I+K G WK
Sbjct: 155 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 214
Query: 290 SMKD 301
M +
Sbjct: 215 GMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
++ + S+ + K + KRPM+A+M+W R +I P + + I+K G WK
Sbjct: 261 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 320
Query: 290 SMKD 301
M +
Sbjct: 321 GMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
++ + S+ + K + KRPM+A+M+W R +I P + + I+K G WK
Sbjct: 309 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 368
Query: 290 SMKD 301
M +
Sbjct: 369 GMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
++ + S+ + K + KRPM+A+M+W R +I P + + I+K G WK
Sbjct: 309 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 368
Query: 290 SMKD 301
M +
Sbjct: 369 GMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +2
Query: 170 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 310
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 185 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 301
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +2
Query: 170 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 310
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 185 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 301
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +2
Query: 170 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 310
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 185 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 301
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +2
Query: 170 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 310
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 185 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 301
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 34.7 bits (76), Expect = 0.095
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 170 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 301
P+RP+ YM + ++++ENP ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 158 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 304
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 158 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 304
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 158 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 304
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 110 SSKIISKFLPSGKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK 289
S +IIS+ PS KK+K+T K A A+ ++ S +P + TE GE W
Sbjct: 472 SIEIISEEAPSSKKIKLTASEKAQKLAQS--SEFAKREVFSGDPINKATEWL--NGEKW- 526
Query: 290 SMKDKTEW 313
DK EW
Sbjct: 527 ---DKVEW 531
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 143 GKKVKMTDKPKRPMSAYMLWLNSAREQIKSE--NPGLRVTEIAKKGGEIWKSMKDKTE 310
G K K D K+P++A+M ++ R+ + E N + E+ K+ G+ W + + +
Sbjct: 182 GGKAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQ 239
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 270 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFF 145
FLA+ + FS F C A N SM +FGL I+ FF
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFF 58
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 270 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFF 145
FLA+ + FS F C A N SM +FGL I+ FF
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFF 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,681
Number of Sequences: 27780
Number of extensions: 293424
Number of successful extensions: 854
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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