Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E16
         (1032 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.81 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   10.0 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 25/102 (24%), Positives = 27/102 (26%)
 Frame = +2

Query: 611  PPXXPXXXXPWXXXXXGAXPPQXXXXXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXP 790
            PP       P       A PP        P PK      P      S  P  P P    P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP--SGAPPVPKPSVAAP 1169

Query: 791  KXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPP 916
              P   P    PP  +  A      P    P    P   +PP
Sbjct: 1170 PVPA--PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 749  SXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPP 916
            S  P  P P    P           PP    P+S     P P G      P  IPP
Sbjct: 1038 STAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
 Frame = +2

Query: 749  SXTPXNPPPKFXX----PKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIP- 913
            S  P  PPP+       P  P+       PP    P++  +  P        NPP   P 
Sbjct: 335  SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394

Query: 914  -PXGXXXXXXXXGXXLQTGXXTXXTPPXXP 1000
             P          G   +T      TPP  P
Sbjct: 395  IPGRSAPALPPLGNASRTSTPPVPTPPSLP 424



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +2

Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNP 898
           P + PP+   P      P    PP     +S     P P  P S NP
Sbjct: 237 PSSRPPE-RVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +2

Query: 758  PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGP 883
            P  PPP    P  P   P    PP    P       P    P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,481
Number of Sequences: 5004
Number of extensions: 13915
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)