Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E16
(1032 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 33 0.25
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.44
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.44
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.58
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.77
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.77
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.77
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.3
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 7.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 9.4
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 9.4
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.25
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 698 PGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXP 874
PGP + P R P PPP + P P R P P P P P
Sbjct: 32 PGPLRPWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPPPPEPEP 90
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPP 916
P PPP + + P P PP + P R P P PP PP
Sbjct: 37 PWGPPPPWHRNRGP---PPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPPPP 86
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.44
Identities = 29/126 (23%), Positives = 34/126 (26%)
Frame = +2
Query: 506 PPXXPQWXPXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXXX 685
PP P P + P P G + PP P P G PP
Sbjct: 267 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP---PPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 686 XXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXX 865
PG P P PPP++ P P P + P S
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY-PSAGPGMYP-PPPPSRPPAPPSGHGMI 381
Query: 866 PXPXGP 883
P P P
Sbjct: 382 PPPPPP 387
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +2
Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNP-PXXIP 913
P PPP P P P P+ P S P P P P P +P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.44
Identities = 29/126 (23%), Positives = 34/126 (26%)
Frame = +2
Query: 506 PPXXPQWXPXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXXX 685
PP P P + P P G + PP P P G PP
Sbjct: 277 PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP---PPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 686 XXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXX 865
PG P P PPP++ P P P + P S
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY-PSAGPGMYP-PPPPSRPPAPPSGHGMI 391
Query: 866 PXPXGP 883
P P P
Sbjct: 392 PPPPPP 397
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +2
Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNP-PXXIP 913
P PPP P P P P+ P S P P P P P +P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.58
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = +2
Query: 728 PXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXE--XPASXXRXXP-XPXGPXSXNP 898
P +S + PP P+ PR P PP+ P S R P P P NP
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
Query: 899 PXXIP 913
P P
Sbjct: 184 PRTPP 188
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +2
Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPP 916
P PPP+ PRR P P+ P + P P P PP IPP
Sbjct: 147 PRTPPPR---SPPPRRPPMTPPSPQRRPPRTPPS--PEPRNP-PRTPPSPIPP 193
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 728 PXXXXXRSXTPXNPPPKF--XXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGP 883
P R+ P +PPP+ P P+R P PP E P + R P P P
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRP-PRTPPSPE-PRNPPRTPPSPIPP 193
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.77
Identities = 34/140 (24%), Positives = 42/140 (30%)
Frame = +2
Query: 503 TPPXXPQWXPXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXX 682
+PP P P G P A P P G P P P G+ PP
Sbjct: 236 SPPPPPP--PKGSPPLAGSGSPPPPPAAGS-------PPPPRTGSP-PPPPTGSPPPPPA 285
Query: 683 XXXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRX 862
P P+ P T PPP+ P PP+ + A
Sbjct: 286 GGSPPP-PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP--ER 342
Query: 863 XPXPXGPXSXNPPXXIPPXG 922
P P + +PP PP G
Sbjct: 343 SPPTGSPPTGSPPTGRPPRG 362
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/75 (28%), Positives = 23/75 (30%)
Frame = +2
Query: 767 PPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPPXGXXXXXXXX 946
PPP+ P P P PP PA P P PP PP G
Sbjct: 265 PPPRTGSPPPP---PTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Query: 947 GXXLQTGXXTXXTPP 991
G G + PP
Sbjct: 319 GSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.77
Identities = 34/140 (24%), Positives = 42/140 (30%)
Frame = +2
Query: 503 TPPXXPQWXPXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXX 682
+PP P P G P A P P G P P P G+ PP
Sbjct: 257 SPPPPPP--PKGSPPLAGSGSPPPPPAAGS-------PPPPRTGSP-PPPPTGSPPPPPA 306
Query: 683 XXXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRX 862
P P+ P T PPP+ P PP+ + A
Sbjct: 307 GGSPPP-PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP--ER 363
Query: 863 XPXPXGPXSXNPPXXIPPXG 922
P P + +PP PP G
Sbjct: 364 SPPTGSPPTGSPPTGRPPRG 383
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/75 (28%), Positives = 23/75 (30%)
Frame = +2
Query: 767 PPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPPXGXXXXXXXX 946
PPP+ P P P PP PA P P PP PP G
Sbjct: 286 PPPRTGSPPPP---PTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Query: 947 GXXLQTGXXTXXTPP 991
G G + PP
Sbjct: 340 GSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.77
Identities = 34/140 (24%), Positives = 42/140 (30%)
Frame = +2
Query: 503 TPPXXPQWXPXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXX 682
+PP P P G P A P P G P P P G+ PP
Sbjct: 242 SPPPPPP--PKGSPPLAGSGSPPPPPAAGS-------PPPPRTGSP-PPPPTGSPPPPPA 291
Query: 683 XXXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRX 862
P P+ P T PPP+ P PP+ + A
Sbjct: 292 GGSPPP-PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP--ER 348
Query: 863 XPXPXGPXSXNPPXXIPPXG 922
P P + +PP PP G
Sbjct: 349 SPPTGSPPTGSPPTGRPPRG 368
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/75 (28%), Positives = 23/75 (30%)
Frame = +2
Query: 767 PPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIPPXGXXXXXXXX 946
PPP+ P P P PP PA P P PP PP G
Sbjct: 271 PPPRTGSPPPP---PTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Query: 947 GXXLQTGXXTXXTPP 991
G G + PP
Sbjct: 325 GSPPPAGTGSPPPPP 339
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.3
Identities = 31/131 (23%), Positives = 36/131 (27%)
Frame = +2
Query: 530 PXGXPXRALEXXPKXPLXXGXFXXRXXPPXXPXXXXPWXXXXXGAXPPQXXXXXXXPGPK 709
P G P + P+ P G P P G PP P
Sbjct: 323 PQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPP- 381
Query: 710 KXXXXXPXXXXXRSXTPXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXS 889
P + P PP F P+ P P PP P + P GP
Sbjct: 382 ------PQSGPPGAFAP--PPSAFGAPQGPG-GPGGYGPPPPGGPGAPGSYGPPQGGPGG 432
Query: 890 XNPPXXIPPXG 922
PP PP G
Sbjct: 433 FGPP---PPGG 440
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = -1
Query: 921 PXGGIXXGGXXDXGPXGXGIXLXXXAGISXLGGXXXXGXRRGXLGXXNFGGGFXG 757
P GG GG GP G G AG +GG G + G G G G+ G
Sbjct: 114 PIGGGAQGGYAGAGPIGGGAQ-GGYAGAGPIGG----GAQGGYAGPIGGGAGYQG 163
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 758 PXNPPPKFXXPKXPRRXPXXXXPPKXEXPASXXRXXPXPXGPXSXNPPXXIP 913
P PPP P P P P P P P P PP +P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 9.4
Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Frame = +2
Query: 602 RXXPPXXPXXXXPWXXXXXGAXPPQXXXXXXXPGPKKXXXXXPXXXXXRSXTPXNPPPKF 781
R PP P W GA PP PG + P P P F
Sbjct: 97 RGYPPPPPQGADTWR----GAPPPAHHGHFGPPGHH-------FQGPPQHFPPGPPRPHF 145
Query: 782 XXPKXPRRXP-XXXXPPKXEXPAS 850
P P R P PP+ + PA+
Sbjct: 146 PGPPGPHRPPEHYPGPPRPQAPAA 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,455,793
Number of Sequences: 27780
Number of extensions: 137178
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2730644118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -