Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E12
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    34   0.024
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   8.4  

>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = +1

Query: 160 AAVLFPGLVKNEDKAIECLGGIRQLSQA----YTELNKKRLGLSYQPQNKLAKKIYGDCV 327
           A +  PG   N+D   + LGG++ + +A    +    +  L L+ +P++K    +    V
Sbjct: 12  ALIEHPGFANNKDAFFQTLGGVQSIQKACQTSFQNPKQALLELNLRPKDKYHHPVQAR-V 70

Query: 328 NTAGVLLKVKVKKTINGSEVKREVISTTPLGQVRKIYKFESLCDFQY 468
            +   LL V +KK  N         S   + ++R+++ F  + DFQY
Sbjct: 71  QSRNDLL-VTIKKMDN---------SVQNVSRIRQVFLFRDMADFQY 107


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 709 ERGGQPTGLKFSLT 750
           +RGGQPTG+ F +T
Sbjct: 185 DRGGQPTGILFGVT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,987
Number of Sequences: 5004
Number of extensions: 71441
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)