Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E10
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 28 1.6
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 28 1.6
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 28 2.1
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 4.9
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 6.4
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 6.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 8.5
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 8.5
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 8.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 550 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 669
I R S H R+ G +R Q R+K R S GP+R
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 550 IRRGSHHHRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 669
I R S H R+ G +R Q R+K R S GP+R
Sbjct: 3 ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKR 42
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 636 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 514
P + FL+P+T SGTF + P S R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425
>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 124
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 779 T*NKIQTESVLYRQYFGTN*NAPLQNHPTYFRH 681
T ++ T S+L + Y+G + P +N+PT +R+
Sbjct: 24 TNKEVPTTSLLSKDYYGHSIEEPDENNPTRWRY 56
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 486 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 596
SS TR + R RGC T P PR G T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 6.4
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = +3
Query: 252 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 431
L P++ P TTSD + V+S+P+ R S+ T + T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314
Query: 432 WWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 575
S K RK S+G+ SS VT K R+ + N H T F P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 693 LFSASWVPSLWSLISLR 643
L+S+SW+P+L L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 260 ACPVLSEDYFRPWRQLAAAS 319
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 515 GAAPETVESRLSSDGVLTITAPRKVPD 595
G P T+ES ++ D L I RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 618 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 514
+F+S +TA T GAV+V P+ + ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,504
Number of Sequences: 5004
Number of extensions: 62191
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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