Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E09
(934 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 30 3.0
01_01_0083 + 631196-631675 29 4.0
04_04_0887 + 29095087-29096166 26 4.9
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 29 5.3
03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525... 29 5.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 7.0
03_02_0178 + 6195402-6199158,6199438-6200003 29 7.0
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 25 7.7
11_01_0422 + 3246528-3248606 28 9.2
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.2
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 489 PXPXGXGGGGXGXGXXVXPPPXPP 418
P P GGGG G G PPP PP
Sbjct: 29 PIP-SCGGGGGGAGPTPPPPPPPP 51
>01_01_0083 + 631196-631675
Length = 159
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 483 PXGXGGGGXGXGXXVXPPPXP 421
P G GGGG G PPP P
Sbjct: 94 PAGGGGGGGGFNYPAPPPPNP 114
>04_04_0887 + 29095087-29096166
Length = 359
Score = 26.2 bits (55), Expect(2) = 4.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 474 PRXGRGXXPPPPPP 515
PR G PPPPPP
Sbjct: 124 PRRGNHFSPPPPPP 137
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 498 PPPPPPXK*XKP 533
PPPPPP +P
Sbjct: 135 PPPPPPPLPLRP 146
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXPPXE 412
G GGGG G G PP PP E
Sbjct: 49 GPGGGGGGGGGMGIPPRPPPPE 70
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 483 PXGXGGGGXGXGXXVXPPP 427
P G GGGG G G PPP
Sbjct: 50 PGGGGGGGGGMGIPPRPPP 68
>03_02_0045 -
5251234-5251305,5251362-5251419,5252256-5252539,
5252836-5253019,5253564-5253814,5253921-5254024,
5254143-5254281
Length = 363
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 462 LPXXPRXGRGXXPPPPPPXK*XKPXXGGG 548
LP P PPPPPP P G G
Sbjct: 21 LPSRPSTSAASQPPPPPPSAATPPPPGAG 49
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 1099 PPPPSIGAGAPPPPPPP 1115
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 486 RGXXPPPPPPXK*XKPXXGGGXXKKXXXGXRG 581
RG PPPPPP + G G ++ G G
Sbjct: 21 RGPPPPPPPPRRRPGDYDGDGFDRRKGFGGGG 52
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 25.4 bits (53), Expect(2) = 7.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 462 LPXXPRXGRGXXPPPPPP 515
+P GR PPPPPP
Sbjct: 278 MPALSVCGRAAAPPPPPP 295
Score = 21.4 bits (43), Expect(2) = 7.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 498 PPPPPPXK 521
PPPPPP +
Sbjct: 293 PPPPPPAR 300
>11_01_0422 + 3246528-3248606
Length = 692
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 483 PXGXGGGGXGXGXXVXPPPXPP 418
P GGGG G G PPP PP
Sbjct: 223 PASDGGGGGGGGGDT-PPPFPP 243
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +3
Query: 741 PPLPXPPXPRGXXXNSSXXXXXXXXXXXXXXXPXPPXVXXLFFPXHXPPXXXGPXXPLXS 920
PPLP P P P PP + L P H P G PL
Sbjct: 511 PPLPPGPHPSLLAGGQQQQYQQMQQQHPQFPRPPPPNMPQLQPPAHMLPHAQGSRAPLPQ 570
Query: 921 XP 926
P
Sbjct: 571 LP 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,864
Number of Sequences: 37544
Number of extensions: 253431
Number of successful extensions: 4384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3847
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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