Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E09
(934 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 29 3.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.3
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 6.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 8.3
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 8.3
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 8.3
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXP 421
G GGGG G G PPP P
Sbjct: 32 GCGGGGGGGGCCAPPPPPP 50
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXP 421
G GGGG G G PPP P
Sbjct: 60 GGGGGGCGGGGGCAPPPAP 78
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXP 421
G GGGG G G PPP P
Sbjct: 60 GGGGGGCGGGGGCAPPPAP 78
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXPP 418
G GGGG G PPP PP
Sbjct: 83 GGGGGGYGRPQGYVPPPPPP 102
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 371 PPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 381 PPAPPSGHGMIPPPPPP 397
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXPP 418
G G GG G G PPP PP
Sbjct: 198 GGGSGGSGGGSGRFPPPPPP 217
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXPP 418
G GGG G G PPP PP
Sbjct: 40 GGCGGGGGCGGGCAPPPPPP 59
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 477 GXGGGGXGXGXXVXPPPXPP 418
G GGG G G PPP PP
Sbjct: 97 GGCGGGGGCGGGCAPPPPPP 116
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 237 PPLPPVGAGAPPPPPPP 253
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 223 PPLPPVGAGAPPPPPPP 239
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 465 PXXPRXGRGXXPPPPPP 515
P P G G PPPPPP
Sbjct: 223 PPLPPVGAGAPPPPPPP 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,946,951
Number of Sequences: 27780
Number of extensions: 138456
Number of successful extensions: 1780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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