Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E06
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 52 3e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 52 3e-07
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 52 6e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 51 7e-07
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 48 9e-06
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 43 2e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 40 0.002
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 40 0.002
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 40 0.002
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.006
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.069
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 33 0.16
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 33 0.16
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 30 1.5
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 29 3.4
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 29 3.4
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 29 3.4
AF036694-7|AAB88345.2| 116|Caenorhabditis elegans Hypothetical ... 28 6.0
Z70780-10|CAA94827.1| 330|Caenorhabditis elegans Hypothetical p... 28 7.9
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 28 7.9
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 125 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEW 289
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRW 73
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 125 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEW 289
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRW 73
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEW 289
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEW 608
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEW 289
KK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKW 603
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
K D+ KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
D KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 286
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 161 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 277
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 286
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 161 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 277
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 286
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 161 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 277
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 286
RK+ K PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 161 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 277
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 34.7 bits (76), Expect = 0.069
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 146 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
P+RP+ YM + ++++ENP ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 134 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 134 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 134 MTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
MT K + S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 246 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 118
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 246 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 118
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +2
Query: 26 IGNSLRFCFTFSTSTVWFVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIK 205
IG + F F W Y R + + + P S +W+ RE +
Sbjct: 533 IGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFLQNSHNDVWV--PREVAE 590
Query: 206 SENPGLRVTEIAKKGGEIWKSMKDKTEW 289
E + V ++ +WK +K KTEW
Sbjct: 591 QEREVMTVRMNRRQTNSVWKWIKTKTEW 618
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +2
Query: 26 IGNSLRFCFTFSTSTVWFVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIK 205
IG + F F W Y R + + + P S +W+ RE +
Sbjct: 354 IGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFLQNSHNDVWV--PREVAE 411
Query: 206 SENPGLRVTEIAKKGGEIWKSMKDKTEW 289
E + V ++ +WK +K KTEW
Sbjct: 412 QEREVMTVRMNRRQTNSVWKWIKTKTEW 439
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +2
Query: 26 IGNSLRFCFTFSTSTVWFVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIK 205
IG + F F W Y R + + + P S +W+ RE +
Sbjct: 533 IGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFLQNSHNDVWV--PREVAE 590
Query: 206 SENPGLRVTEIAKKGGEIWKSMKDKTEW 289
E + V ++ +WK +K KTEW
Sbjct: 591 QEREVMTVRMNRRQTNSVWKWIKTKTEW 618
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +2
Query: 26 IGNSLRFCFTFSTSTVWFVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIK 205
IG + F F W Y R + + + P S +W+ RE +
Sbjct: 533 IGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFLQNSHNDVWV--PREVAE 590
Query: 206 SENPGLRVTEIAKKGGEIWKSMKDKTEW 289
E + V ++ +WK +K KTEW
Sbjct: 591 QEREVMTVRMNRRQTNSVWKWIKTKTEW 618
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +2
Query: 26 IGNSLRFCFTFSTSTVWFVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIK 205
IG + F F W Y R + + + P S +W+ RE +
Sbjct: 354 IGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFLQNSHNDVWV--PREVAE 411
Query: 206 SENPGLRVTEIAKKGGEIWKSMKDKTEW 289
E + V ++ +WK +K KTEW
Sbjct: 412 QEREVMTVRMNRRQTNSVWKWIKTKTEW 439
>AF036694-7|AAB88345.2| 116|Caenorhabditis elegans Hypothetical
protein CD4.7 protein.
Length = 116
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 294 RKLPRPRSNMQKX*KSYNAH 353
RKL RP N Q+ KS+NAH
Sbjct: 29 RKLARPEFNKQRFKKSFNAH 48
>Z70780-10|CAA94827.1| 330|Caenorhabditis elegans Hypothetical
protein F46B6.11 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 52 HILYVYSLVCVPVQKLFQNFCHQEK 126
H+L + +V +P+ LF ++C+Q K
Sbjct: 81 HVLMDFLIVRIPLTSLFTSYCYQSK 105
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 125 KVKMTDKPKRPMSAYMLWLNSAREQIKSE--NPGLRVTEIAKKGGEIWKSMKDKTE 286
K K D K+P++A+M ++ R+ + E N + E+ K+ G+ W + + +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQ 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,505,545
Number of Sequences: 27780
Number of extensions: 165438
Number of successful extensions: 518
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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