Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E04
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   250   3e-67
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   249   5e-67
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.7  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   4.8  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    26   6.4  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.4  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   8.5  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  250 bits (611), Expect = 3e-67
 Identities = 125/229 (54%), Positives = 155/229 (67%)
 Frame = +1

Query: 91  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGARK 450
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G + 
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 451 FLD*LMEMYPRRLGXKRAXKIRKLFNLSKEDDXXXXXXXXXLPAXERKEMLXPRHKAPKI 630
                    P+RLG KRA KIR+ FNLSKEDD         +    +KE   P  KAPKI
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREV--VPKKEGKKPYTKAPKI 178

Query: 631 QXLXTPVVLQRXRHRLALXXKRXXKRKSSEAEYAKLLAQRKKESKVRRQ 777
           Q L TP  LQ  RHR AL  ++  K +   AE+A+L+A+R  E+K +R+
Sbjct: 179 QRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  249 bits (609), Expect = 5e-67
 Identities = 125/229 (54%), Positives = 155/229 (67%)
 Frame = +1

Query: 91  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGARK 450
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G + 
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 451 FLD*LMEMYPRRLGXKRAXKIRKLFNLSKEDDXXXXXXXXXLPAXERKEMLXPRHKAPKI 630
                    P+RLG KRA KIR+ FNLSKEDD         +    +KE   P  KAPKI
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREV--VPKKEGKKPYTKAPKI 178

Query: 631 QXLXTPVVLQRXRHRLALXXKRXXKRKSSEAEYAKLLAQRKKESKVRRQ 777
           Q L TP  LQ  RHR AL  ++  K +   AE+A+L+A+R  E+K +++
Sbjct: 179 QRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 452 NFLAPLRTITRAKTERLASTIHPRTDLRFLSPSRRGL*HEWPFDIRRRTRL 300
           N+L P   + R   ERLA T+  R +      SR  + H+W    R R  L
Sbjct: 133 NYLTP-NALQRQAKERLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQAL 182


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 698 SLSASPLRLNMLNCLPRERRNPRCVARKRSNAGG 799
           SL+ S    N+++C+P+  R  R +A ++ ++GG
Sbjct: 217 SLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGG 250


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 402 QSLGLGSCYCAQGCQEIPGLTDG 470
           QS  + S YC  G   IP L DG
Sbjct: 409 QSTDVASKYCDSGSNNIPSLVDG 431


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 794 LRLIFSWRRTLDSFFLW 744
           L +I  WR TLDSF +W
Sbjct: 133 LIIINVWRETLDSFLVW 149


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 160 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVKPMKKKQNL 38
           A   PP  T S IP  GT+ L   +   P NV   +  + L
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETRASEIL 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,015
Number of Sequences: 5004
Number of extensions: 61060
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)