Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E04
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   236   2e-62
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   236   2e-62
02_05_0956 - 33064104-33066425                                         29   6.7  
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    29   6.7  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  236 bits (578), Expect = 2e-62
 Identities = 125/234 (53%), Positives = 152/234 (64%), Gaps = 2/234 (0%)
 Frame = +1

Query: 91  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 444
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 445 RKFLD*LMEMYPRRLGXKRAXKIRKLFNLSKEDDXXXXXXXXXLPAXERKEMLXPRHKAP 624
                      PR  G KRA KIRKLFNL+K+DD              +        KAP
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKV--SKAP 178

Query: 625 KIQXLXTPVVLQRXRHRLALXXKRXXKRKSSEAEYAKLLAQRKKESKVRRQEKI 786
           KIQ L TP+ LQR R R+A   +R  K+KS  AEY KLLAQR KE + RR E +
Sbjct: 179 KIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  236 bits (577), Expect = 2e-62
 Identities = 126/234 (53%), Positives = 151/234 (64%), Gaps = 2/234 (0%)
 Frame = +1

Query: 91  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 270
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 271 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 444
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 445 RKFLD*LMEMYPRRLGXKRAXKIRKLFNLSKEDDXXXXXXXXXLPAXERKEMLXPRHKAP 624
                      PR  G KRA KIRKLFNLSK+DD              +        KAP
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKV--SKAP 178

Query: 625 KIQXLXTPVVLQRXRHRLALXXKRXXKRKSSEAEYAKLLAQRKKESKVRRQEKI 786
           KIQ L TP+ LQR R R+A   KR  K+KS  AEY KLLAQR KE + RR E +
Sbjct: 179 KIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 585 LGWEHAXDDITTYIIFFAKV 526
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 741 CPEKEGIQGASPGKDQTQAVSFN 809
           C  KE IQGA+PG  Q Q +  N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,838,987
Number of Sequences: 37544
Number of extensions: 457318
Number of successful extensions: 1260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)