Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E03
(916 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.7
Z81057-5|CAB02917.2| 846|Caenorhabditis elegans Hypothetical pr... 29 4.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.1
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.1
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 428 PPPKKXXXFFXPPPPXKKXXAXGGGGXPP 514
PPP + PPPP + G GG PP
Sbjct: 771 PPPPRGGMHHMPPPPSFRGGRGGHGGPPP 799
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = -3
Query: 629 FFXPPXXPXGFFFXKKKXXXGXXXPPPP--XGXKKXXXXXXGGXPPP 495
FF PP P GF G PPPP G GG PPP
Sbjct: 63 FFIPPPVPNGFI--PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -3
Query: 629 FFXPPXXPXGFFFXKKKXXXGXXXPPPPXGXKKXXXXXXGGXPPPXXP 486
F PP P G G PPP G G PPP P
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = -3
Query: 620 PPXXPXGFFFXKKKXXXGXXXPPPPXGXKKXXXXXXGGXPPPXXPXFFWXGG 465
PP P G + G PPP + GG PPP P + GG
Sbjct: 299 PPPPPPG----RTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 418 KKPPPPKKXXXXFFXPPPXQKKXGXXGGGXPPXXXXXFFFXPXGGGGXXXP 570
+ PPPP PPP + G G P F P G GG P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP 336
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 425 PPPPKKXXXFFXPPPPXKKXXAXGGGGXPP 514
PPPP PPPP + + G G PP
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPP 365
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = -3
Query: 620 PPXXPXGFFFXKKKXXXGXXXPPPPXGXKKXXXXXXGGXPPPXXPXFFWXGG 465
PP P G + G PPP + GG PPP P + GG
Sbjct: 309 PPPPPPG----RTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 418 KKPPPPKKXXXXFFXPPPXQKKXGXXGGGXPPXXXXXFFFXPXGGGGXXXP 570
+ PPPP PPP + G G P F P G GG P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPP 346
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 425 PPPPKKXXXFFXPPPPXKKXXAXGGGGXPP 514
PPPP PPPP + + G G PP
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPP 375
>Z81057-5|CAB02917.2| 846|Caenorhabditis elegans Hypothetical
protein F10D11.6 protein.
Length = 846
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +2
Query: 419 KNPPPPK--KXXXFFXPPPPXKKXXAXGGGGXPP 514
K PPPP PPP K A GGGG P
Sbjct: 405 KYPPPPTIAGGPVAVQPPPDCSKCSAAGGGGDDP 438
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 425 PPPPKKXXXFFXPPPPXKKXXAXGGGGXPPXXXXXF 532
PPPP PPPP GG PP F
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 425 PPPPKKXXXFFXPPPPXKKXXAXGGGGXPPXXXXXF 532
PPPP PPPP GG PP F
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 425 PPPPKKXXXFFXPPPPXKKXXAXGGGGXPPXXXXXF 532
PPPP PPPP GG PP F
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 424 PPPPKKXXXXFFXPPPXQKKXGXXGGGXPPXXXXXFFFXPXGG 552
PPPP + + PPP + G GG P + P G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPG 722
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 424 PPPPKKXXXXFFXPPPXQKKXGXXGGGXPPXXXXXFFFXPXGGGGXXXP 570
PPPP F PPP G G PP P G GG P
Sbjct: 367 PPPPVSSAPGNFAPPPQS---GPPGAFAPPPSAFGAPQGPGGPGGYGPP 412
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 424 PPPPKKXXXXFFXPPPXQKKXGXXGGGXPPXXXXXFFFXPXGG 552
PPPP + + PPP + G GG P + P G
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPG 722
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,541
Number of Sequences: 27780
Number of extensions: 318356
Number of successful extensions: 1162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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