Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_E01
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...   233   3e-62
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    31   0.17 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.51 
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    30   0.51 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    29   0.90 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    29   1.2  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   4.8  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   6.3  

>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score =  233 bits (569), Expect = 3e-62
 Identities = 108/182 (59%), Positives = 144/182 (79%), Gaps = 2/182 (1%)
 Frame = +2

Query: 74  MFYLIGLGLGDAKDITVKGLEIVKKCDKVYLEAYTSILTIGKEALETFYGRTLTLADREL 253
           MFYLIGLGL D KDIT++GLE VKKC ++YLEAYTSIL + KE LE  YG+ + LADRE+
Sbjct: 1   MFYLIGLGLFDEKDITLRGLETVKKCQRIYLEAYTSILLVQKEKLEELYGKEVILADREM 60

Query: 254 CESNIDDILKEAKDIEIALLVVGDPLGATTHTDMLLRAKELGVKTQIVHNASIMNAVSCC 433
            ES+ D+ILK+A + ++A+LVVGDP+GATTH D+++RA+EL +  +++HNASIMNA+  C
Sbjct: 61  VESSSDEILKDADNCDVAMLVVGDPMGATTHADLVIRARELKIPVRMIHNASIMNAIGAC 120

Query: 434 GLQLYNFGETVSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLT--KK 607
           GLQLY FG+TVS+ F+ + ++P SF++ I  N S  LHTL LLDIKVKE + E+L   +K
Sbjct: 121 GLQLYKFGQTVSLVFFENNYRPQSFYDHIKENVSLGLHTLVLLDIKVKEQSWENLARGRK 180

Query: 608 VY 613
           VY
Sbjct: 181 VY 182



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +1

Query: 622 CTAVGLSRVGAPDQRISVMTLEAMQMSDLGPPLHSLVIPAPNLH 753
           C AVG  R+G+ DQ I   TL+ +   D+GPPLHS+V+   ++H
Sbjct: 215 CVAVG--RMGSDDQVIFAGTLQELAEHDIGPPLHSVVLVGRDVH 256


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +2

Query: 416  NAVSCCGLQLYNFGETVSIPFWTDTWKPDSFFEKIIA-------NYSRNLHTLCLLDIKV 574
            N +S  GL L+N  +  S P W D     +FFEKI+        NY    +TL +  + +
Sbjct: 2028 NPLSKKGLSLFN--DLFSFPRWKDCQLNSNFFEKILVDMDFNDNNYRTVANTLFVFGVIL 2085

Query: 575  KEPTEESLTKKVYNVIA 625
            K    E + ++  ++IA
Sbjct: 2086 KNRGMEYIQREYSHIIA 2102


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +2

Query: 485 DTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLTKKVYNVIAQQWAFQGWERLTK 664
           D W  +S  +   A   + L  L ++   +    E     K   VI  +W F  W  + +
Sbjct: 198 DFWSRNSHIDIPSAFQEKLLSRLSIIFENIARSLENVNFSKASKVIPIEWVFSTWCSIFQ 257

Query: 665 GYLL*HWKL 691
            YL+ +W L
Sbjct: 258 KYLMNNWHL 266


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +2

Query: 113 DITVKGLEIVKKCDKVYLEAYTSILTIGKEALETFYGRTLTLAD--RELCESNID-DILK 283
           D  +  L++ ++    Y EAY ++  IGK  L T++G   + AD  + L  + +  D+++
Sbjct: 214 DEPILTLDLPQEILASYKEAYETLGKIGKLILTTYFGSLQSNADVLKGLPIAGVHVDVVR 273

Query: 284 EAKDIEIALLVVGD 325
             ++++ AL V+G+
Sbjct: 274 APENLDRALAVLGE 287


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 398 HNASIMNAVSCCGLQLYNFGETVSIPFWTDTWKPDS 505
           +  ++++ V  CG+ + N G TVS+    D W  +S
Sbjct: 489 YRKNVLHLVVGCGINVSNLGPTVSLNTLVDEWNKNS 524


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 83  LIGLGLGDAKDITVKGLEIVKKCDKVYLEAY--TSILTIGK 199
           ++G G+G    I +KG EI+++ ++V    +  T  LT+GK
Sbjct: 498 MVGTGVGALNGIIIKGGEILERLNQVDTVVFDKTGTLTVGK 538


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 476 FWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLTKKV 610
           F  D +K   F    I +Y   LHT+C  D++V      +L + V
Sbjct: 348 FQIDNYKWKLFNTLGIMDYKNRLHTICFQDLEVSIANYGALVQAV 392


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 347 TDMLLRAKELGVKTQIVHNASIMNAVSC 430
           T  LL A+E  +KT  +H+ S  + +SC
Sbjct: 158 TGKLLNAEETPIKTGDLHSTSASSVISC 185


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 512 EKIIANYSRNLHTLCLLDIKVKE 580
           EK+   Y++N+H  CL + ++KE
Sbjct: 336 EKVEHTYTQNVHNACLREQQIKE 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,025
Number of Sequences: 5004
Number of extensions: 70766
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)