Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E01
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1037 - 13576316-13576503,13576727-13576818,13577043-135770... 249 3e-66
01_05_0090 + 18038219-18038421,18039365-18039488,18040229-180403... 30 2.2
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 30 2.9
01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676... 29 6.6
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366... 29 6.6
12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-96... 28 8.8
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 28 8.8
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433... 28 8.8
>03_02_1037 -
13576316-13576503,13576727-13576818,13577043-13577082,
13577578-13577807,13577906-13578030,13578142-13578291
Length = 274
Score = 249 bits (609), Expect = 3e-66
Identities = 113/187 (60%), Positives = 149/187 (79%), Gaps = 7/187 (3%)
Frame = +2
Query: 74 MFYLIGLGLGDAKDITVKGLEIVKKCDKVYLEAYTSILTIGKEA-----LETFYGRTLTL 238
M Y++GLGLGD +DITV+GL+ V++C KVY+EAYTS+L++G + LE YG+ +T+
Sbjct: 1 MLYIVGLGLGDERDITVRGLDAVRRCAKVYMEAYTSLLSLGLDPSALSNLEKMYGKEITV 60
Query: 239 ADRELCESNIDDILKEAKDIEIALLVVGDPLGATTHTDMLLRAKELGVKTQIVHNASIMN 418
ADRE+ E D +L+EA D ++A LVVGDP GATTHTD+++RAK +GV+ +++HNAS+MN
Sbjct: 61 ADREMVEERADQMLREAADADVAFLVVGDPFGATTHTDLVVRAKNMGVEVKVIHNASVMN 120
Query: 419 AVSCCGLQLYNFGETVSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESL 598
AV CGLQLY +GET+SIPF+T+TW+PDSF+EKI N LHTLCLLDI+VKEPT ESL
Sbjct: 121 AVGVCGLQLYRYGETISIPFFTETWRPDSFYEKIQNNRRLGLHTLCLLDIRVKEPTLESL 180
Query: 599 T--KKVY 613
KKVY
Sbjct: 181 CRGKKVY 187
Score = 37.9 bits (84), Expect = 0.011
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 619 DCTAVGLSRVGAPDQRISVMTLEAMQMSDLGPPLHSLVIPAPNLHP 756
D +G++R+G+ DQ+I ++ + D GPPLH L+I HP
Sbjct: 217 DSLCIGVARLGSDDQKIVAGPMKKLLDVDFGPPLHCLII-VGETHP 261
>01_05_0090 +
18038219-18038421,18039365-18039488,18040229-18040311,
18040401-18040473,18040584-18040688,18040803-18040853,
18041705-18041781,18041879-18042037,18043548-18043692,
18043776-18043884,18043959-18044107,18044175-18044258,
18044784-18044825,18045811-18046014
Length = 535
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 242 DRELCESNIDDILKEAKDI 298
D ELCES +DD+L+E DI
Sbjct: 461 DSELCESMVDDMLRERDDI 479
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 350 DMLLRAKELGVKTQIVHNASIMNAVSCCGLQLYNFGE 460
DMLLR G+ TQ + SIM+ V C G LY G+
Sbjct: 462 DMLLRDSPTGIVTQ---SPSIMDLVKCDGAALYYHGK 495
>01_07_0146 +
41464554-41464943,41465607-41465945,41467582-41467662,
41468487-41468578,41468667-41468710,41468788-41468843,
41469656-41469814,41469922-41469957,41470130-41470231
Length = 432
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 455 GETVSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLTKKVYNVIAQQW 634
G T + D P + E I +H LCL ++KV T L +K N+ + W
Sbjct: 96 GNTCLHKYLEDNLSPVQYHEDYIYKL---IHLLCLPEMKVFLDTVRLLAEKTDNLADELW 152
Query: 635 AFQGWERLTKGYLL 676
+ ++L + +L
Sbjct: 153 NYMKNDKLVESAVL 166
>01_07_0142 +
41433580-41433969,41434633-41434971,41436609-41436689,
41437514-41437605,41437694-41437737,41437815-41437870,
41438683-41438841,41438949-41438984,41439157-41439258
Length = 432
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 455 GETVSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLTKKVYNVIAQQW 634
G T + D P + E I +H LCL ++KV T L +K N+ + W
Sbjct: 96 GNTCLHKYLEDNLSPVQYHEDYIYKL---IHLLCLPEMKVFLDTVRLLAEKTDNLADELW 152
Query: 635 AFQGWERLTKGYLL 676
+ ++L + +L
Sbjct: 153 NYMKNDKLVESAVL 166
>12_01_0127 +
963723-963828,965057-965193,965470-965577,965669-965785
Length = 155
Score = 28.3 bits (60), Expect = 8.8
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Frame = +2
Query: 329 LGATTHTDMLLRAKELGVKTQIVHNASIMNAVSCCGLQLYNFGETVS------IPFWT-D 487
L + +D+ + AKE+GV+ + H AS + C G+TVS IP D
Sbjct: 48 LSSNETSDLWVTAKEVGVRLEQYHKASSLTFAIQCLQDGPEAGQTVSHVHIHVIPRKKGD 107
Query: 488 TWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESL 598
K D ++ I R L LDI+ K+ T E +
Sbjct: 108 FEKNDEIYDAIDVK-ERELKEKLDLDIERKDRTMEEM 143
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 224 RTLTLADRELCESNIDDILKEAKDIEIALLVVGDPLGATTHTDMLLRAKELG 379
R T+ E N+ L+ +DI +A ++GD G+T + K+LG
Sbjct: 562 RPYTMKGYEQIADNVASGLETVRDINVASRLIGDVFGSTLDDPLSQCYKKLG 613
>01_07_0350 +
42941976-42942401,42942510-42942737,42943201-42943380,
42943515-42943730,42943854-42943955,42944377-42944439,
42944526-42944594,42945662-42945730,42947003-42947069,
42947449-42947514,42947600-42947697,42947820-42947857,
42947929-42948016,42948101-42948373,42948470-42948535,
42948624-42948779
Length = 734
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 788 LXNCER*XSSSGCKLGAGMTRLCRGGPRSDIC 693
L NC S+S CK+ T+LC GPR +C
Sbjct: 170 LGNCVYLWSASNCKV----TKLCDLGPRDSVC 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,701
Number of Sequences: 37544
Number of extensions: 427212
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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