Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_E01
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49907-6|CAA90089.1| 274|Caenorhabditis elegans Hypothetical pr... 237 1e-62
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 30 2.6
AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical ... 30 2.6
Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical pr... 29 3.4
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 29 6.0
AF101319-6|AAC69351.1| 314|Caenorhabditis elegans Hypothetical ... 29 6.0
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 29 6.0
AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical ... 29 6.0
>Z49907-6|CAA90089.1| 274|Caenorhabditis elegans Hypothetical
protein B0491.7 protein.
Length = 274
Score = 237 bits (579), Expect = 1e-62
Identities = 111/179 (62%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
Frame = +2
Query: 74 MFYLIGLGLGDAKDITVKGLEIVKKCDKVYLEAYTSILTIG--KEALETFYGRTLTLADR 247
+FYLIGLGLGD +DITVKGL IVK C +V+LEAYTSIL G K LE FYGR + ADR
Sbjct: 2 VFYLIGLGLGDVEDITVKGLNIVKNCARVHLEAYTSILCYGLDKTNLEKFYGREIIEADR 61
Query: 248 ELCESNIDDILKEAKDIEIALLVVGDPLGATTHTDMLLRAKELGVKTQIVHNASIMNAVS 427
+ E D IL A ++ALLVVGDP GATTH D++LRAK+ + +++HNASIMNAV
Sbjct: 62 TVVEQESDAILNGADKEDVALLVVGDPFGATTHADLVLRAKQQNIPVKVIHNASIMNAVG 121
Query: 428 CCGLQLYNFGETVSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLLDIKVKEPTEESLTK 604
CCGLQLYNFGETVSI WTD W+P+S+++KI N R +HTLCLLDIK KE T E++ +
Sbjct: 122 CCGLQLYNFGETVSIVMWTDEWQPESYYDKIALNRKRGMHTLCLLDIKTKEQTVENMMR 180
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +1
Query: 631 VGLSRVGAPDQRISVMTLEAMQMSDLGPPLHSLVIPAPNLHP 756
VGL+RVG +Q+I +++ M ++G PLHSL+IP HP
Sbjct: 223 VGLARVGWDNQKIVYASMKDMSEMEMGEPLHSLIIPG-ETHP 263
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 464 VSIPFWTDTWKPDSFFEKIIANYSRNLHTLCLL 562
V +P W D W+ SF A +R ++ LC++
Sbjct: 67 VFLPLWQDQWQKYSFHMSFFAYSTRYVYPLCMM 99
>AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical
protein C16C4.6 protein.
Length = 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 228 VLP*NVSKASFPIVNIEVYASRYTLSHFFTISKPLTVISFASPRPNPIK 82
++P +S SFP++ + A R TL HF I ++SF+ PN ++
Sbjct: 52 IIPPVMSSPSFPVLRLPSKALRATLQHFAIID----LLSFSLISPNSVR 96
>Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical
protein M199.2 protein.
Length = 488
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 185 LTIGKEALETF-YGRTLTLADRELCESNIDDILKEAKDIE 301
L IG A E + Y + + L DRE CE N++ ++K +D++
Sbjct: 199 LPIGFAASELYDYEKGVPL-DRETCEKNLEKLIKNDRDVD 237
>Z81104-1|CAB70255.1| 329|Caenorhabditis elegans Hypothetical
protein M199.1 protein.
Length = 329
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 440 QLYNFGETVSIPFWTDTWKPDS 505
+L +G T SIPF+ +WKP S
Sbjct: 3 RLIQYGNTDSIPFYNCSWKPQS 24
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 601 QEGIQRDCTAVGLSRVGAPDQRISVMTLEAMQMSDLGPPLHSLVIPAPNLH 753
Q G+ T GL V Q++ M +SD+G P S IP PN H
Sbjct: 8 QLGLDSLLTDFGLESVMNKQQQL----FANMGLSDIGAPTPSTAIPVPNAH 54
>AF101319-6|AAC69351.1| 314|Caenorhabditis elegans Hypothetical
protein K08D9.1 protein.
Length = 314
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 401 NASIMNAVSCCGLQLYNFGETVSIPFWTDTW 493
N SI N +S GL+LYNF + ++ F D W
Sbjct: 178 NISIEN-ISYVGLRLYNFDQNGAMTFNKDAW 207
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 601 QEGIQRDCTAVGLSRVGAPDQRISVMTLEAMQMSDLGPPLHSLVIPAPNLH 753
Q G+ T GL V Q++ M +SD+G P S IP PN H
Sbjct: 8 QLGLDSLLTDFGLESVMNKQQQL----FANMGLSDIGAPTPSTAIPVPNAH 54
>AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical
protein F59H6.2 protein.
Length = 701
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 310 ISSWRSSWGYNTYRYVASCKRIGS*NTDSTQCINYECGQ 426
I +W + YRY ASC G+ T+S +C+N +C +
Sbjct: 168 IGAW-VDYDMRVYRYCASC---GNMLTESQKCVNKKCNR 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,663,378
Number of Sequences: 27780
Number of extensions: 394117
Number of successful extensions: 844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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