Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D24
         (932 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subuni...    49   2e-05
BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subuni...    49   2e-05
AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens ...    49   2e-05
BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.    36   0.28 

>BC112029-1|AAI12030.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +1

Query: 10  LXPHYRESLRFFRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 168
           L   ++E  +    +PGI  +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 90  LKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>BC104988-1|AAI04989.1|  146|Homo sapiens mediator complex subunit 9
           protein.
          Length = 146

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +1

Query: 10  LXPHYRESLRFFRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 168
           L   ++E  +    +PGI  +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 90  LKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>AK001055-1|BAA91483.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10193 fis, clone HEMBA1004763. ).
          Length = 146

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +1

Query: 10  LXPHYRESLRFFRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRNMCSFE 168
           L   ++E  +    +PGI  +   Q +Q + LR Q+R K ELLQKY+++C FE
Sbjct: 90  LKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFE 142


>BC062368-1|AAH62368.1|   99|Homo sapiens LOC152217 protein protein.
          Length = 99

 Score = 35.5 bits (78), Expect = 0.28
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +3

Query: 186 MPLRALLKYLANNERIVQKIAESYPVRRAAQL 281
           M LR LL  L ++ ++V++++ES P+RRAAQL
Sbjct: 1   MVLRRLLAALLHSPQLVERLSESRPIRRAAQL 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,487,880
Number of Sequences: 237096
Number of extensions: 1418689
Number of successful extensions: 7628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7414
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)