Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D23
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.8  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   8.6  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 827 PPPPXGGXFFXXXXXPPPPPXXXKK 753
           PPPP  G        PPPPP   KK
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 827 PPPPXGGXFFXXXXXPPPPP 768
           PPPP     F     PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 827 PPPPXGGXFFXXXXXPPPPP 768
           PPPP    F      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 139 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 285
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 827 PPPPXGGXFFXXXXXPPPPP 768
           PPPP  G        PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 827 PPPPXGGXFFXXXXXPPPPP 768
           PPPP G         PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 648 GGGPXPXXFFFFXGXXPPPPXXXPP 574
           GG P P       G  PPPP   PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 783 PPPPPP 766
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 257 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 87
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 227 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 99
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 273 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 386
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,404
Number of Sequences: 5004
Number of extensions: 40199
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)