Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D23
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0067 - 20460206-20460703,20461255-20461530                       25   6.4  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   9.0  
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   9.0  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    28   9.0  

>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 24.6 bits (51), Expect(2) = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 642 GPXPXXFFFFXGXXPPPP 589
           GP P   +F  G  PPPP
Sbjct: 13  GPPPPPQYFQAGPPPPPP 30



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 600 PPPPXXXPPP 571
           PPPP   PPP
Sbjct: 46  PPPPQAAPPP 55


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 827  PPPPXGGXFFXXXXXPPPPPXXXKK 753
            PPPP  G        PPPPP   KK
Sbjct: 1936 PPPPVEGKPKPPPHAPPPPPPEAKK 1960


>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 166 PKEDNSLNTLAESAKKTIEELREKVE 243
           PKE ++  T+A + +KT EE+R +++
Sbjct: 91  PKESSTATTMAAATEKTAEEIRRELQ 116


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 199 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 333
           E A+K  E L+  +K   +L PE +K+ F +++ +F +F   L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,801,330
Number of Sequences: 37544
Number of extensions: 459780
Number of successful extensions: 5021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4608
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)