Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D23
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 32 0.66
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.7
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 4.7
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.1
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
T16G12.5 protein.
Length = 1142
Score = 31.9 bits (69), Expect = 0.66
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 166 PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 333
P ED S N + AKK + +L+ V AP T ++ + VD NE+ + L E
Sbjct: 834 PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG F PPPPP
Sbjct: 773 PPPPPGG--FKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG F PPPPP
Sbjct: 773 PPPPPGG--FKGGPPPPPPP 790
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG F PPPPP
Sbjct: 356 PPPPPGG--FKGGPPPPPPP 373
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPP 330
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP GG PPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPP 346
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 751 FFFXXXGGGGGXXXXXKKXPPXGGG 825
F F GGGGG PP GGG
Sbjct: 16 FLFNLLGGGGGGCCAPPPPPPCGGG 40
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 172 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 342
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
protein T01H10.8 protein.
Length = 2692
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 172 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 342
E++S L K TI + L + K FG ++D FN + NL+ ++ K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP G + PPPPP
Sbjct: 334 PPPPPPGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 827 PPPPXGGXFFXXXXXPPPPP 768
PPPP G + PPPPP
Sbjct: 344 PPPPPPGMRYPGGMPPPPPP 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,764
Number of Sequences: 27780
Number of extensions: 295130
Number of successful extensions: 2201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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