Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D21
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   134   2e-32
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   133   3e-32
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   2.0  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.6  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   4.7  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   4.7  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   6.2  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  134 bits (323), Expect = 2e-32
 Identities = 64/92 (69%), Positives = 75/92 (81%)
 Frame = +3

Query: 153 RLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 332
           RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEEERER+D
Sbjct: 23  RLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKD 82

Query: 333 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 428
            YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 83  QYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  133 bits (322), Expect = 3e-32
 Identities = 66/103 (64%), Positives = 80/103 (77%)
 Frame = +3

Query: 153 RLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 332
           RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEEERER+D
Sbjct: 23  RLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKD 82

Query: 333 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 461
            YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 83  QYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 440 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 279
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L   KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 223 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 113
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 276 SQVRGISIKLQEEERERRDNYVPEV 350
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 261 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 353
           R+   S+ R  S KL EEER+RR  +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 404 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 291
           Q  L VG+  DD+   +R+   ++ TP++ L    DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,803
Number of Sequences: 5004
Number of extensions: 48380
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)