Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D19
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 217 GPGIKPXNFWKKXFFLTQPPGGSLVVPXLVAIVFS 321
           G  I   N W+  +   +  GG+ +VP  +A+  +
Sbjct: 34  GLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALA 68


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 217 GPGIKPXNFWKKXFFLTQPPGGSLVVPXLVAIVFS 321
           G  I   N W+  +   +  GG+ +VP  +A+  +
Sbjct: 87  GLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALA 121


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/34 (20%), Positives = 17/34 (50%)
 Frame = +1

Query: 238 NFWKKXFFLTQPPGGSLVVPXLVAIVFSXNXTYF 339
           N W+  +   +  GG+ ++P  + +V +    +F
Sbjct: 3   NVWRFPYLCYKNGGGAFLIPYFLTLVLAGIPMFF 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,814
Number of Sequences: 438
Number of extensions: 4005
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)