Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D18
(931 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 32 0.13
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.40
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 30 0.40
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.40
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 29 0.71
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.6
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 2.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.8
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 3.8
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 27 3.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 27 5.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 5.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 6.6
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 6.6
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 6.6
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.6
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 26 6.6
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 26 8.7
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 428 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSI 601
C++ +M + ++++++ R + ++D+P E ++ DK E KSLE++S S+
Sbjct: 3 CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.40
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 600 IEFDNCSKLLTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 463
+EF CS L +S ILS + E KL G+STSA + K A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 71 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 250
E+ E ++ +QN+ QK S+ + SNK++ + +N EK + ++ + E
Sbjct: 42 EDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKEE 101
Query: 251 T 253
+
Sbjct: 102 S 102
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.40
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Frame = +2
Query: 68 LEEANETQQLMQNEGEDDEQKIPQSATSPVTS----NKISSEAASLTSKNHEKVLTSTGN 235
LEE + + ++ E ++ E K+ ++A T N ++ E +L + + +T
Sbjct: 1354 LEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRL 1413
Query: 236 SLNESTKVSYVNERRLQR-DFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLS 412
+ + K + + L R ++ TN+ K + + + + M+K + L D H + S
Sbjct: 1414 AAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQES 1473
Query: 413 AFGSG--CSMEQMINIRDQQE 469
A + EQ ++ ++E
Sbjct: 1474 ASSDAEQITKEQFEQLKSEKE 1494
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.71
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 104 NEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRL 283
NE + PQ T+ +S ISS + + G +LN + S+ ++
Sbjct: 261 NEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVS--SFNSDSHS 318
Query: 284 QRDFMRSNYTNRPKNIPKETPDVKN 358
+D++ +YTN P + KE+ D N
Sbjct: 319 PKDYISQSYTNEP-GLKKESADSFN 342
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 71 EEANETQQLMQNEGEDDEQKIPQSATSPV------TSNKISSEAASLTSKNHEKVLTSTG 232
E+ N ++ + EG +++ +S+T+ TS ++ +A TS H+K TS+
Sbjct: 76 EKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSANSSAERTSSQHQKPETSSQ 135
Query: 233 NSLNESTKVSYVNERRLQRD 292
+ + V VNE+ ++
Sbjct: 136 IGKDNAAPVENVNEKSTSQE 155
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +2
Query: 71 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 250
+ +E+ ++ NE + +IP+ T T+ E + + +L+ + ++ NES
Sbjct: 1285 QNLDESACVLTNESSLSQTEIPEEKTENETTAVNGFENSK--KRQFSSLLSGSIDTNNES 1342
Query: 251 TKVSYVN-ERRLQRDFMRSNYTNRPKNIPKETPDVKNME-KALLELL 385
KVS V ++ +D ++S T I K D+K+ E + L +LL
Sbjct: 1343 NKVSSVEFDKSGPQDIIQS-MTEATFEIEKNIQDLKSEEVQKLSDLL 1388
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 356 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFE 535
N+E+ + + S+ +GC E + ++ + +++A+ H ++ + E+ F
Sbjct: 56 NIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115
Query: 536 NSAS--RDKMEQLVKSLEQL 589
A+ +DK + +V +E++
Sbjct: 116 RYAASLKDKKKMIVSGIEKV 135
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 227 TGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKNIPKET 343
TGN N S V ++ +RDF +N NRPK + ++T
Sbjct: 630 TGNIYSNNSPGVKALSSDNFKRDFGDTNAINRPKFVGQQT 669
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 736 ILSLRKCSNPITYYIILLSFTKLIISTLILCPVWF 840
I+S N + +I F LI +CP+WF
Sbjct: 264 IISAYIALNAVASVVIAFVFLSLIFFISFICPIWF 298
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNH-EKVLTSTGNSLN 244
++E T+ ++ +DDE A SN +S E+ +H + V+ S GNS+
Sbjct: 344 VDEGTSTEANDESSEDDDEDNNTDEANEDAQSN-VSDESPKGEGSSHSDNVVLSDGNSVK 402
Query: 245 E 247
+
Sbjct: 403 K 403
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 224 STGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKN 328
+TGNS NE K S + + D+M SNYT N
Sbjct: 79 ATGNSTYNELVKTSMLYQSGEDSDYMPSNYTTSEGN 114
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 68 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISS 178
LEE N + + + EDD+++ S+TS V + S+
Sbjct: 340 LEEKNASTKTENDSNEDDKEECQSSSTSSVPESTAST 376
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 5.0
Identities = 22/110 (20%), Positives = 41/110 (37%)
Frame = +2
Query: 71 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 250
E+ NE ++ ++ ++ K + +S T + T G++ +S
Sbjct: 99 EKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKS 158
Query: 251 TKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHT 400
+ +R + +T R KN PK +P + E A E HT
Sbjct: 159 SHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHT 208
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 158 TSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVN 271
++NKIS +L+SK K TG + S YVN
Sbjct: 510 STNKISENPTTLSSKVENKNEPKTGENKEPSQTNEYVN 547
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 740 YHLENVPIQLPIILYCLALQN 802
+ LE V +Q P+ + CLA++N
Sbjct: 39 FSLEKVQLQFPVSIRCLAVEN 59
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 290 LFEDVFHLRTTPSWIRLDCYQYW-*VLFHDFLMLNLRLRL 174
++ VFH+R TP +LD + VLF + L L LRL
Sbjct: 153 VWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRL 192
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/89 (21%), Positives = 39/89 (43%)
Frame = +2
Query: 65 HLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLN 244
H +E ++L G D+ +K ++ + N+ + A S+ K+ + T +
Sbjct: 588 HFHSVSEIKKLPM--GTDELEKSMVRPSTAMYINRQNENAVSI-DKSRDLQGTVNTKEIR 644
Query: 245 ESTKVSYVNERRLQRDFMRSNYTNRPKNI 331
+ +SY N+R L D Y ++ N+
Sbjct: 645 SRSALSYQNDRPLATDLPSVIYNHKHPNV 673
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +2
Query: 68 LEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNE 247
++E N+ +D++K + S + AA SK + V S +
Sbjct: 146 VKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSRVTAEET 205
Query: 248 STKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVK 355
STK S ++D + + T + TPD+K
Sbjct: 206 STKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIK 241
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 8.7
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 1/155 (0%)
Frame = +2
Query: 77 ANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTK 256
AN +L+ EG + +P S+ T+ E + + G S+ + +
Sbjct: 40 ANRIIRLIVEEGLNH---LPVSSAKVTTAQNAEYEGVMFDGRICGVSIMRAGESMEQGLR 96
Query: 257 VSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSG-CS 433
+ R + R T++P + P+ ++ K + LLD L+ GS C+
Sbjct: 97 ECCRSVRIGKILIQRDEETHKPVLHYIKLPE--DISKRYVLLLDPM----LATGGSAICA 150
Query: 434 MEQMINIRDQQEHLARLHFRLCADVDKPTEDNFEN 538
ME +IN+ +QE + L+ + K D F N
Sbjct: 151 MEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPN 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,179
Number of Sequences: 5004
Number of extensions: 80678
Number of successful extensions: 294
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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