Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D16
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.20
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.4
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 744 PPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
P P G PPPPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
P PP PPPPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.1 bits (62), Expect = 0.82
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP G PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 744 PPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPP PPPPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPP 691
PPPP PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 708 PPPPPPXXXXXXXPPP 661
PPPPPP PPP
Sbjct: 11 PPPPPPGFEPPSQPPP 26
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 708 PPPPPPXXXXXXXPPPXGGG 649
PPPPPP PP G G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG 330
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP + G P PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Frame = -1
Query: 744 PPPKKKXXXXGXPPPPPPXXXXXXXP--PPXG 655
PPP PP PPP P PP G
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 74 FCSGVRHVYCVGNSWS 121
FC G+ +YC+G+S++
Sbjct: 97 FCKGIYEIYCIGDSFT 112
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 747 PPPPKKKXXXXGXPPPPPPXXXXXXXPPP 661
PPPP PPPP PPP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 80 SGVRHVYCVGNSWSLFGC 133
+G+RH CV N +L+GC
Sbjct: 152 AGLRHWICVTNEGNLYGC 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,311
Number of Sequences: 5004
Number of extensions: 34008
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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