Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D12
         (946 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    27   3.8  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.8  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   8.9  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 69  VPAGSEG*L-PFNTMTYNSQDGGSNPCRFTWYANIYCGETFGSVRRMRDRRN 221
           VP G    L  +NT+T++     SN    TWY    CG T      M   RN
Sbjct: 13  VPKGQRTELYVYNTLTHSKVPFVSNGSNLTWYC---CGPTVYDASHMGHARN 61


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 182 FATIYISIPCEAARIATTILAVVCHCIERQLTLASCGYLAXPV 54
           FA+   S+P EA    TTI  +        +T+  CGY+A P+
Sbjct: 149 FASSVFSVPAEAI---TTIFHISLTVSLLTMTVFLCGYIAGPI 188


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 135 YHHPGCCMSLY*TAANPRFLRVPRRPCACRVK 40
           Y HPG  + L+ +  N RF  +P  P   + K
Sbjct: 60  YQHPGSSVGLFESHENIRFYPIPSLPAYLQPK 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,744
Number of Sequences: 5004
Number of extensions: 50196
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)