Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D11
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   5.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   6.6  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   8.7  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   8.7  

>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 440 NLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIY--N 613
           N+F  E++   Y C  +    + ++L+    Q F F    EI+ + F+ Q  P L+   N
Sbjct: 5   NVFRLEEKR--YKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKN 62

Query: 614 YLSSVAQ 634
           Y+SS  Q
Sbjct: 63  YVSSELQ 69


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +2

Query: 437 FNLFYCEDETVTYNCELENDAQLVQILENVCTQLFSFYRSKEIQLQRFTLQFIPTLIYNY 616
           F L     E +  NC   +   ++  +EN     F +Y S + Q+    L F+  LI++ 
Sbjct: 292 FTLIPTYQEVMASNCSKYDSTLMLTFIENHDLYRFPYYTSDQSQIMG-ALSFV--LIWDG 348

Query: 617 LSSVAQGKKKTY 652
           + S+  G+++ +
Sbjct: 349 IPSIFYGQEQGF 360


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 788 PLKKEAHDILMIELKMEV*MTQPSVFHFHLQLQSCICQ 675
           PLK+E H I + ++ + +  T+ SVF +H QL  CI Q
Sbjct: 418 PLKEE-HKIFLSKVLIPLHQTK-SVFLYHPQLTYCIVQ 453


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 704 HLQLQSCICQLAMFLCT 654
           H   QSC CQ   F+C+
Sbjct: 625 HFSFQSCACQTLFFICS 641


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 638 KKKTYRCIETLLIGIYNFEVVDENGKPKVVSFRLPSLAQSSIYHEPLSLRGSV 796
           +KK Y+C+ +    +Y   V+   GK  V    LP   +   Y++ + L G++
Sbjct: 387 RKKIYKCLASASEEVYKEAVLSIRGKLIVWERNLPD--ELKQYYDVIKLNGTI 437


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 388 SNFIFLQRCVFIQPFSYQMLPLRHFCR*KKTFQTQAFPKFV 266
           +NF+  QRC  + PF YQ+       R KK FQ      FV
Sbjct: 145 NNFMATQRCGKLDPFGYQLK------RSKKVFQACGTQVFV 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,607
Number of Sequences: 5004
Number of extensions: 69365
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)