Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D09
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 34 0.17
10_08_0229 - 16016818-16017387 32 0.70
10_08_0227 - 16004868-16005449 30 2.8
08_02_1292 + 25943074-25943643 30 2.8
04_03_1017 + 21747044-21748051 30 2.8
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 3.7
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472... 29 6.5
01_05_0490 + 22672241-22674679 28 8.6
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 28 8.6
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 511 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNA-ILADEYXXSA 687
GGG G +V A + + Y T A +A+P+ + + SYG I DE S
Sbjct: 388 GGGGGRHVAVTATPARSVVSSYSTATATTAARPRATRPAKVASSYGGGGSIRDDESLTSC 447
Query: 688 AEGGGSLPSFNT 723
GG+LP++ T
Sbjct: 448 PAFGGALPNYMT 459
>10_08_0229 - 16016818-16017387
Length = 189
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +1
Query: 508 GGGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAILADEYXXSA 687
GGGG G Y+ S + ++ + + P +++ G G AD Y S+
Sbjct: 70 GGGGGGNGGGRYSGSGHGSGSGRGSSSSQVGPDPYRGSSNAGGTGGGEGGGRADGYYGSS 129
Query: 688 AEGGGS 705
G GS
Sbjct: 130 GYGSGS 135
>10_08_0227 - 16004868-16005449
Length = 193
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 511 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYG 648
GGGNG+ SSV N+ PY A + SGGS S G
Sbjct: 137 GGGNGSGSSVANNGTPNTPPPYANANASGNGNGNGGGQSGGSGSGG 182
>08_02_1292 + 25943074-25943643
Length = 189
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 259 RSYQELRPAHARDM-QPYAH-LDDALFKP----PTPGAASTDGVYLRRSPELSPSP 408
R L P H R + + YAH + LF+P P P AA+ V+ +P ++P+P
Sbjct: 87 RRRHALTPGHVRAIAERYAHDVGSVLFRPLPPPPPPVAAAAVPVFAAPAPPMAPAP 142
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 337 PPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHY 450
PP P AAS D Y +P SP P + + P P Y
Sbjct: 268 PPPPRAASPD--YTPSTPPSSPLPSAAESFTVPPPRRY 303
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 262 SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPER---RDDYRP 432
SY P+++ Y+ A + P +PG + T Y SP +PS + Y P
Sbjct: 1765 SYSPTSPSYSPTSSAYSPTSPA-YSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSP 1823
Query: 433 PAPLHY 450
+P +Y
Sbjct: 1824 SSPNYY 1829
>06_01_0653 -
4720913-4721152,4721898-4721966,4722059-4722124,
4722814-4722879,4723001-4723162,4723255-4723347,
4723449-4723541,4723626-4724273
Length = 478
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 586 GADLSAQPQLWTASGGSPSYGSNAILADEYXXSAAEGGGSLPSFNT 723
GA A + G+PS NA +A + GGS+PSF T
Sbjct: 187 GAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGT 232
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 HARDMQPYAHLDDALFKPPTPGA-ASTDGVYLRRSPELSPSPERRDDYRPPAP 441
H + + HL D + P+ A AS D +P +P+P RR PP P
Sbjct: 564 HHHNHHHHHHLSDGHYSSPSSDASASPDSTVRTTNP--APAPPRRPPPPPPPP 614
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 285 CGPQLLVAARRRRQPASGPGGVAALRRAFFH 193
C + VAA +R+P G +A + +A FH
Sbjct: 808 CETPMTVAASGKRKPGDAAGSLATVSKALFH 838
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,773,790
Number of Sequences: 37544
Number of extensions: 374894
Number of successful extensions: 1800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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