Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D09
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.92 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 349  GAASTDGVYLRRSPELS-PSPERRDDYRPPAP 441
            G     GV   + P ++ PSP +R  Y PP P
Sbjct: 971  GGCQPGGVVQSQQPIMTDPSPFKRGRYTPPQP 1002


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 LRRSPELSPSPERRDDYR 429
           + RSPEL P P  + D R
Sbjct: 192 IHRSPELVPMPTLKGDGR 209


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 537 RVHAVRLQQRRAILHQRSRPLRPAAALDRVRRVSELRQQR 656
           R H+   QQR+ +   R R        DRV    + +QQ+
Sbjct: 57  RQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQ 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,081
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)