Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D08
         (974 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XUJ2 Cluster: Putative uncharacterized protein; n=2; ...    42   0.018
UniRef50_Q17AY3 Cluster: Putative uncharacterized protein; n=1; ...    37   0.90 
UniRef50_Q9VVR0 Cluster: CG13380-PB; n=1; Drosophila melanogaste...    36   2.1  

>UniRef50_Q9XUJ2 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 257

 Score = 42.3 bits (95), Expect = 0.018
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 197 GSXRKXMXNRIGRGVPKVTDAYSKXCSCNREXATVXCXTCGXYXXGRMRLKCXXHPRVXF 376
           G  +K   +R     P +  +  K C C+R+   V C  CG    GR+++ C  HP +  
Sbjct: 150 GGPQKYSMSRPNAFAPMIAQSDEKECICDRKNTHVVCKRCGYECVGRVQVTCGKHPLILA 209

Query: 377 L 379
           L
Sbjct: 210 L 210


>UniRef50_Q17AY3 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 94

 Score = 36.7 bits (81), Expect = 0.90
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 260 YSKXCSCNREXATVXCXTCGXYXXGRMRLKCXXHPRVXFL 379
           Y+  C C R    V C  C     GR+   C  HP V FL
Sbjct: 28  YNPDCICQRPQTKVVCSLCNFASYGRVLRSCKAHPNVYFL 67


>UniRef50_Q9VVR0 Cluster: CG13380-PB; n=1; Drosophila
           melanogaster|Rep: CG13380-PB - Drosophila melanogaster
           (Fruit fly)
          Length = 169

 Score = 35.5 bits (78), Expect = 2.1
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 263 SKXCSCNREXATVXCXTCGXYXXGRMRLKCXXHPRVXFL 379
           SK C C R      C  C  Y  GR+   C  HP   FL
Sbjct: 91  SKHCICMRSNTAYECERCHQYFYGRLAQICDLHPNEFFL 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,471,926
Number of Sequences: 1657284
Number of extensions: 5534750
Number of successful extensions: 11577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11099
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91040045921
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)