Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D08
         (974 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344068-1|AAS47836.1|  630|Homo sapiens junctophilin 4 protein.       33   2.1  
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    31   4.8  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               31   4.8  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        31   4.8  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        31   4.8  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    31   4.8  
BC073988-1|AAH73988.1|  682|Homo sapiens FMNL1 protein protein.        31   8.4  
AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein.     31   8.4  
AF432213-1|AAL99920.1|  991|Homo sapiens CLL-associated antigen ...    31   8.4  

>AY344068-1|AAS47836.1|  630|Homo sapiens junctophilin 4 protein.
          Length = 630

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 790 PFPPSSPXFXSXPWXSPPXQXPXNPGG 870
           P  PSSP     PW +PP + P  PGG
Sbjct: 460 PELPSSPASSHQPWRAPPCRSPLPPGG 486


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 796 PPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           PP  P +   P   PP Q P  P GP    PP
Sbjct: 297 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 796 PPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           PP  P +   P   PP Q P  P GP    PP
Sbjct: 297 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 796 PPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           PP  P +   P   PP Q P  P GP    PP
Sbjct: 224 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 255


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 796 PPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           PP  P +   P   PP Q P  P GP    PP
Sbjct: 334 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 365


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 796 PPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           PP  P +   P   PP Q P  P GP    PP
Sbjct: 297 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328


>BC073988-1|AAH73988.1|  682|Homo sapiens FMNL1 protein protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 733 PFXPRPXXYAXLXNXXXLXPFPPSSPXFXSXPWXSPPXQXPXNPGGP 873
           P  P P     L       P PP  P     P   PP   P  PGGP
Sbjct: 151 PGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGP 197


>AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein.
          Length = 1100

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 733 PFXPRPXXYAXLXNXXXLXPFPPSSPXFXSXPWXSPPXQXPXNPGGP 873
           P  P P     L       P PP  P     P   PP   P  PGGP
Sbjct: 569 PGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGP 615


>AF432213-1|AAL99920.1|  991|Homo sapiens CLL-associated antigen
           KW-13 protein.
          Length = 991

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +1

Query: 733 PFXPRPXXYAXLXNXXXLXPFPPSSPXFXSXPWXSPPXQXPXNPGGP 873
           P  P P     L       P PP  P     P   PP   P  PGGP
Sbjct: 460 PGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGP 506


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,328,268
Number of Sequences: 237096
Number of extensions: 1035829
Number of successful extensions: 2813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12991778748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)