Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D08
         (974 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.6  

>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 197 GSXRKXMXNRIGRGVPKVTDAYSKXCSCNREXATVXCXTCGXYXXGRMRLKCXXHPRVXF 376
           G  +K   +R     P +  +  K C C+R+   V C  CG    GR+++ C  HP +  
Sbjct: 150 GGPQKYSMSRPNAFAPMIAQSDEKECICDRKNTHVVCKRCGYECVGRVQVTCGKHPLILA 209

Query: 377 L 379
           L
Sbjct: 210 L 210


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -1

Query: 932 GGKGPPRXXPXXKXGGCXXEGPPGXXGXWXGGXNQGXEXKXGLLGGXG 789
           G  GP    P    G     GPPG  G      N G     G  GG G
Sbjct: 235 GPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGGEG 282


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +1

Query: 742 PRPXXYAXLXNXXXLXPFPPSSPXFXSXPW-XSPPXQXPXN 861
           P P  Y+       L P PPSS  + +  W   PP   P N
Sbjct: 823 PPPMDYSNNRRNSNLTPMPPSSTFYQTPSWDHKPPPTMPAN 863


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +1

Query: 742 PRPXXYAXLXNXXXLXPFPPSSPXFXSXPW-XSPPXQXPXN 861
           P P  Y+       L P PPSS  + +  W   PP   P N
Sbjct: 823 PPPMDYSNNRRNSNLTPMPPSSTFYQTPSWDHKPPPTMPAN 863


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -1

Query: 932 GGKGPPRXXPXXKXGGCXXEGPPGXXGXWXGGXNQGXEXKXGLLGGXG 789
           G  GP    P    G     GPPG  G      N G     G  GG G
Sbjct: 234 GPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGGEG 281


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 790 PFPPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           P PP S      P   PP + P  PG P    PP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 790 PFPPSSPXFXSXPWXSPPXQXPXNPGGPSXXXPP 891
           P PP S      P   PP + P  PG P    PP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,638
Number of Sequences: 27780
Number of extensions: 139425
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)