Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D07
         (955 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   124   3e-27
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   111   3e-23
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    95   3e-18
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    60   1e-07
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    53   9e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    50   7e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    44   0.006
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    39   0.22 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   3.5  
UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase...    34   6.1  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   6.1  
UniRef50_Q5LPI5 Cluster: CobN; n=10; Alphaproteobacteria|Rep: Co...    33   8.1  
UniRef50_Q0SC33 Cluster: Probable NADPH:quinone reductase; n=6; ...    33   8.1  
UniRef50_Q94BU4 Cluster: At1g33470/F10C21_14; n=2; Arabidopsis t...    33   8.1  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  124 bits (299), Expect = 3e-27
 Identities = 60/64 (93%), Positives = 60/64 (93%)
 Frame = +2

Query: 500 GTVQRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXAPSCALLFRPCRLP 679
           GT QR RC RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL APSCALLFRPCRLP
Sbjct: 8   GTSQR-RC-RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 65

Query: 680 DTCP 691
           DTCP
Sbjct: 66  DTCP 69


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  111 bits (267), Expect = 3e-23
 Identities = 65/120 (54%), Positives = 70/120 (58%)
 Frame = +2

Query: 320 RGEAVCVLGALPLPRSLTHCARSFGCGEXXXXXXXXXXXXXXNQGITXXRXXDQNASKRP 499
           R   +C  G +PLPRSLT  ARSFGCGE               +         +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDGDGNFLEDTR---------KTLSKEE 76

Query: 500 GTVQRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXAPSCALLFRPCRLP 679
               RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P  LP
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 94.7 bits (225), Expect = 3e-18
 Identities = 45/54 (83%), Positives = 47/54 (87%)
 Frame = +2

Query: 506 VQRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXAPSCALLFRP 667
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 59.7 bits (138), Expect = 1e-07
 Identities = 29/43 (67%), Positives = 30/43 (69%)
 Frame = -1

Query: 496 PFAGVLIXXSXXRYPLILWITVLPPLSELIPLAAAERPSAVSQ 368
           P    L+  S   YPLILWITVLPPLSEL PLAA ERPS  SQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +3

Query: 288 VXSA*MNRPTRGERRFAYWALFRFLXH 368
           V +A MNRPTRGERRFAYWALFRFL H
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 34/105 (32%), Positives = 45/105 (42%)
 Frame = +2

Query: 353 PLPRSLTHCARSFGCGEXXXXXXXXXXXXXXNQGITXXRXXDQNASKRPGTVQRPRCWRF 532
           PLP    +C     C                N  I   R   +N+ + P T        F
Sbjct: 14  PLPNKTRYCCHRQQC----LLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLF 69

Query: 533 SIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLXAPSCALLFRP 667
              S PLT+ITKI  Q +  +T+ +YK T  FPL +PS +LLF P
Sbjct: 70  PYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 50.4 bits (115), Expect = 7e-05
 Identities = 28/46 (60%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 714 PRFPMXXXG-QVSGKRQGRNRRAHEGAXRGKRLVSL*SCRVSPPLT 580
           PRFP      QVSGKRQGRNRRAHEGA   K   SL      PPLT
Sbjct: 54  PRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 21/35 (60%), Positives = 22/35 (62%)
 Frame = +2

Query: 296 CINESXNXRGEAVCVLGALPLPRSLTHCARSFGCG 400
           CI +    R EAV VL ALPL RS T C RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 609 IKIPGVSPXKLPRALSCSDPAAYRIPV-RLSTSGSVAPS 722
           +KI  VS   LP ALSCS+PA  RIPV   S +GSVA S
Sbjct: 32  LKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALS 70


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 34.7 bits (76), Expect = 3.5
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +3

Query: 96  DPDMIRXIDXXGQTTTRM 149
           DPDMIR ID  GQTTTRM
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363


>UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase
           kinase 10; n=21; Euteleostomi|Rep: Mitogen-activated
           protein kinase kinase kinase 10 - Homo sapiens (Human)
          Length = 954

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 667 GSEQESARGSXQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPLYGSWP 494
           GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P + P Y S P
Sbjct: 582 GSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPSYLSVP 639


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -2

Query: 348 APNTQTASPRXLXDSFMQ 295
           APNTQTASPR L DS MQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q5LPI5 Cluster: CobN; n=10; Alphaproteobacteria|Rep: CobN
           - Silicibacter pomeroyi
          Length = 1097

 Score = 33.5 bits (73), Expect = 8.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 658 QESARGSXQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATR 515
           +E+   +  G++P   +VLS F+ SDL        +GGGA GK P  R
Sbjct: 12  EETETPTDLGQSPADLVVLS-FSDSDLGAFAAGWHRGGGAVGKLPTLR 58


>UniRef50_Q0SC33 Cluster: Probable NADPH:quinone reductase; n=6;
           Actinomycetales|Rep: Probable NADPH:quinone reductase -
           Rhodococcus sp. (strain RHA1)
          Length = 333

 Score = 33.5 bits (73), Expect = 8.1
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = -1

Query: 616 IFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPLYGSWPFAGVLIXXSXXRYPLILWI 437
           + I + G  T +L+V     ++     G     RPL G    A ++   +   +PL+   
Sbjct: 237 VIIGMQGGLTGELNVGALIGKRAR-VIGLNVRNRPLTGPGSKAEIIAAVAEKEWPLVTQG 295

Query: 436 TVLPPLSELIPLAAAERPSAV 374
            V P +S  +PLA AER  A+
Sbjct: 296 LVRPVISAKLPLADAERGQAM 316


>UniRef50_Q94BU4 Cluster: At1g33470/F10C21_14; n=2; Arabidopsis
           thaliana|Rep: At1g33470/F10C21_14 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 244

 Score = 33.5 bits (73), Expect = 8.1
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 595 FATSDLSVDFCDARQGGGAYGKTPATRPLYGSWPFAGVLIXXSXXRYPLILWITVLPPLS 416
           F  S  S+D+         YG   A  P+YGS P  GV    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 415 ELIPL 401
              PL
Sbjct: 198 GYAPL 202


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,711,569
Number of Sequences: 1657284
Number of extensions: 10086812
Number of successful extensions: 20765
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20720
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88182286632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)