Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D07
         (955 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-P...    30   4.1  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    30   5.4  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    30   5.4  

>AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-PA
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 705 PMXXXGQVSGKRQGRNRRAHEGAXRGK 625
           PM    +V  KR+GRNR AH    R K
Sbjct: 485 PMPIVTEVRSKRRGRNRHAHHSRSRSK 511


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 263 QVQGGXVGXXICINESXNXRGEAVCVLGALPLPRSLTHCARSFGCG 400
           Q++ G         ES      +VC  G LP+P  L  C +  GCG
Sbjct: 326 QLRAGGAANLAGSAESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 263 QVQGGXVGXXICINESXNXRGEAVCVLGALPLPRSLTHCARSFGCG 400
           Q++ G         ES      +VC  G LP+P  L  C +  GCG
Sbjct: 319 QLRAGGAANLAGSAESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,448,222
Number of Sequences: 53049
Number of extensions: 502717
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4751175096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)