Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D07
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 SGISSLKGGNTVIHRIR 452
           +G+  + G NTVIH+ R
Sbjct: 128 TGVDDILGNNTVIHQPR 144


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 614 DTRRFPLXAPSCALLFRPCR 673
           + R FP+   SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 570 STLKSEVAKPDRTIKIPGVSPXKLPRALS 656
           S++  +VA   R   IP +SP    +ALS
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKALS 107


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 570 STLKSEVAKPDRTIKIPGVSPXKLPRALS 656
           S++  +VA   R   IP +SP    +ALS
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKALS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,230
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)