Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D06
(938 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 42 1e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.019
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.033
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.044
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.044
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.13
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.7
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 6.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 8.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPP-PXXGXNPPPPRXGXXPXKXPPPXXPP 687
PPPPPP P PP P G PPPP PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 540 PPPPPPQXXXTXGXKGXXKAKPP-PXXGXKPXPPPXGGXPXKXXPPXXPP 686
PPPPPP PP P G P PPP G PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 489 GGKXXPPPPXPPXKXGGGGXFXAFXP 412
G PPPP PP GG + A P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -3
Query: 474 PPPPXPPXKXGGGGXFXAFXPPLGAPXXPPXPXXXPXGGFFF 349
PPPP PP G G PP P PP P G ++
Sbjct: 761 PPPPPPPPGVAGAG------PP---PPPPPPPAVSAGGSRYY 793
Score = 23.8 bits (49), Expect(2) = 1.7
Identities = 12/35 (34%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Frame = +1
Query: 604 PPPXXGXNPPPPRXGXXPXKXPPP--XXPPXKXPP 702
PPP P P P P P PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 10/33 (30%), Positives = 11/33 (33%)
Frame = +1
Query: 778 GGXXPPXPKKXXPXVPPXETPXAPPXXXNXGXK 876
GG PP P P P PP G +
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.019
Identities = 25/104 (24%), Positives = 27/104 (25%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXPPRXXGXX 720
PPPPPP+ G P PPPPR + PPP
Sbjct: 338 PPPPPPRSNAA----GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Query: 721 XKKXNXXXXXXXXXXXXXXGGXXPPXPKKXXPXVPPXETPXAPP 852
P P P PP P APP
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 33.1 bits (72), Expect = 0.058
Identities = 23/90 (25%), Positives = 24/90 (26%), Gaps = 5/90 (5%)
Frame = +1
Query: 433 PPPPPFXXGXXXXXXXFPPXKKXXXXXXXXXXXXXDPPPPPPKXXXPXXKRGXXRXNPPP 612
PP PP G PP PP PPP + PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 613 XX-----GXNPPPPRXGXXPXKXPPPXXPP 687
PP G PPP PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 30.7 bits (66), Expect = 0.31
Identities = 33/132 (25%), Positives = 36/132 (27%), Gaps = 13/132 (9%)
Frame = +3
Query: 351 KKTPPXXXXXXXGGXGGPP--GGXKXXKXPPPPPXFXXXXXXXXXXXXXXXXXXXXXXXX 524
KK PP G PP G PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP------------PRSNAAGSIPLPP 355
Query: 525 XXXXGPPPPPPQXXXTXGXK----------GXXKAKPPPXXGXK-PXPPPXGGXPXKXXP 671
PPPPPP+ + G + A PP G P PP G P
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
Query: 672 PXXPPQXXXPXA 707
P P P A
Sbjct: 416 PVPTPPSLPPSA 427
Score = 30.7 bits (66), Expect = 0.31
Identities = 32/117 (27%), Positives = 35/117 (29%), Gaps = 5/117 (4%)
Frame = +1
Query: 349 KKKPPPWXXXXXXGXXGGPQG-GXKXXKXPPPPPFXXGXXXXXXXFPPXKKXXXXXXXXX 525
KK+PPP P G G PPPPP PP +
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR--------- 358
Query: 526 XXXXDPPPPPPKXXXPXXKRGXXRXNPPPXXG----XNPPPPRXGXXPXKXPPPXXP 684
PPPPP P R PPP NPP P P + P P
Sbjct: 359 ----SAPPPPPPRSAPSTGR-----QPPPLSSSRAVSNPPAPPPA-IPGRSAPALPP 405
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Frame = +3
Query: 540 PPPPPPQXXXTXGXKGXXKAKPPPXXG----XKPXPPPXGGXPXKXXPPXXPP 686
PP PPP + K +PPP + PP G PP PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 29.1 bits (62), Expect = 0.95
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Frame = +1
Query: 484 PPXKKXXXXXXXXXXXXXDPPPPPPKXXXPXXKRGXXRXN---PPPXXGXNPPPPR---X 645
PP + PPPPP + G N PPP PPPPR
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP-----PPPPRSNAA 348
Query: 646 GXXP----XKXPPPXXPPXKXP 699
G P + PP PP P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAP 370
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Frame = -3
Query: 483 KXXPPPPXPPXKXGGGGXFXAFXPPLG-------APXXPPXPXXXPXGGFFFXXFXXGGX 325
K PPPP PP + G PP+G P PP P G
Sbjct: 308 KKRPPPPPPPSRRNRG------KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Query: 324 PPP 316
PPP
Sbjct: 362 PPP 364
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 471 PPPXPPXKXGGGGXFXAFXPPLGAPXXPPXP 379
PPP PP + G PP G PP P
Sbjct: 337 PPPPPPPRSNAAGSIP--LPPQGRSAPPPPP 365
Score = 27.1 bits (57), Expect = 3.8
Identities = 24/95 (25%), Positives = 28/95 (29%)
Frame = +3
Query: 543 PPPPPQXXXTXGXKGXXKAKPPPXXGXKPXPPPXGGXPXKXXPPXXPPQXXXPXAGGGXX 722
PP PP + + P P PPP G PP PP+ P +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAP---APPPIPPPSNGTVSS--PPNSPPRPIAPVSMNPAI 284
Query: 723 KKXXXXXXXXXXXXXXAPRGAXPXXXKKXPPPGPP 827
A A KK PPP PP
Sbjct: 285 NSTSKPPLPPPSSRVSA---AALAANKKRPPPPPP 316
Score = 27.1 bits (57), Expect = 3.8
Identities = 31/130 (23%), Positives = 33/130 (25%), Gaps = 5/130 (3%)
Frame = +1
Query: 328 PPXXKXXKKKPPPWXXXXXXGXXGGPQGGXKXXKXPP-PPPFXXGXXXXXXXFPPXKKXX 504
PP + PPP G P + PP PPP G PP
Sbjct: 354 PPQGRSAPPPPPP-RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA--LPPLGNAS 410
Query: 505 XXXXXXXXXXXDPPP--PP--PKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPP 672
PP PP P P G P P PP G P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 673 PXXPPXKXPP 702
P P P
Sbjct: 471 PAAPAPPPAP 480
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Frame = +1
Query: 544 PPPPPKXXXPXXKRGXXRXNPPPXXGXNPP-PPRXGXXPXKXPPPXXP--PXKXPP 702
PP P P PPP PP P + P PPP P P K PP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.044
Identities = 28/83 (33%), Positives = 28/83 (33%)
Frame = -1
Query: 851 GGAXGVSXGGTXGXXFFGXGGXXPPXXXXXXXXXFXGGGXXFFXXXPXXLGGXXLGGXXG 672
GG G S G G FG G GGG F P GG GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-GGFGG 249
Query: 671 GGXFXGXXPXRGGGGFXPXXGGG 603
G G P GGG P GG
Sbjct: 250 GLGGFGGGPGGFGGG--PGGHGG 270
Score = 29.5 bits (63), Expect = 0.72
Identities = 24/78 (30%), Positives = 25/78 (32%)
Frame = -1
Query: 839 GVSXGGTXGXXFFGXGGXXPPXXXXXXXXXFXGGGXXFFXXXPXXLGGXXLGGXXGGGXF 660
G + GG G FG G PP GG GG GG GG
Sbjct: 184 GHNGGGFGG---FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGG 239
Query: 659 XGXXPXRGGGGFXPXXGG 606
G P GGG GG
Sbjct: 240 FGGGPGGFGGGLGGFGGG 257
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -1
Query: 686 GGXXGGGXFXGXXPXRGGGGFXPXXGGGFXLXXPLXXXGXXXLGGGGGG 540
GG G G F G GG G GGF G GGG GG
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.044
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRG-XXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXP 699
PP PPP P K PPP P P G P P PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXPP 702
PP P P P + P P PP P+ P PP PP PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK----PSVGVPPVPPPSTAPP 1218
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXPP 702
PP P P P K P PP P+ P PP PP + PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK----PAAGVPPVPPPSEAPP 1199
Score = 29.1 bits (62), Expect = 0.95
Identities = 26/110 (23%), Positives = 28/110 (25%), Gaps = 7/110 (6%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPPPXXGXNPPPPRXG------XXPXKXPPPXXPPXKXPP 702
PP P P P + P P PP P+ P PP P PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 703 RXXGXXXKKXNXXXXXXXXXXXXXXGGXXPPXPKKXXPXV-PPXETPXAP 849
G P P P V PP E P P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +3
Query: 540 PPPPPPQXXXTXGXKGXXKAKP-PPXXGXKPXPPPXGGXPXKXXPPXXPPQXXXPXAG 710
PP P P K P PP P P P G P PP P P AG
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP-PVPPPSTAPPVPTPSAG 1225
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/125 (21%), Positives = 27/125 (21%), Gaps = 1/125 (0%)
Frame = +1
Query: 328 PPXXKXXKKKPPPWXXXXXXGXXGGPQGGXKXXKXPPPPPFXXGXXXXXXXFPPXKKXXX 507
PP K K PP P PP PP
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 508 XXXXXXXXXXDPPPPPPKXXXPXXKRGXXRXN-PPPXXGXNPPPPRXGXXPXKXPPPXXP 684
PP P P P K P P P P G P P P
Sbjct: 1072 EIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131
Query: 685 PXKXP 699
P P
Sbjct: 1132 PVPVP 1136
Score = 26.2 bits (55), Expect = 6.7
Identities = 23/104 (22%), Positives = 24/104 (23%), Gaps = 1/104 (0%)
Frame = +1
Query: 541 PPPPPPKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXPPRXXGXX 720
PP P P P P P PP P+ PPP P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAP-PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Query: 721 XKKXNXXXXXXXXXXXXXXGGXXPPXPKKXXPXVP-PXETPXAP 849
P P P VP P P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 610 PXXGXNPPPPRXGXXPXKXPPPXXPP 687
P PPPP G P PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 609 PXXGXKPXPPPXGGXPXKXXPPXXPP 686
P P PPP G P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 625 NPPPPRXGXXPXKXPPPXXPPXKXPP 702
NPPPP P PP PP PP
Sbjct: 8 NPPPP---PPPPGFEPPSQPPPPPPP 30
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 543 PPPPPQXXXTXGXKGXXKAKPPPXXGXKPXPPPXGGXPXKXXPPXXPPQXXXP 701
PPPPP T + PPP G PP G PP P P
Sbjct: 908 PPPPPTASMTASAPAIA-SPPPPKVGETYHPPTASG---TRVPPVQQPSHPNP 956
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = +1
Query: 544 PPPPPKXXXPXXKRGXXRXNPPPXXGXNPPP--PRXGXXPXKXPPPXXPPXKXP 699
PP P+ P PPP PPP P P PPP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTP--PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Frame = +1
Query: 628 PPPPRXGXXPXKXPP-PXXPPXKXPP 702
PPPP P PP P PP PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +3
Query: 597 AKPPPXXGXKPXPPPXGGXPXKXXPPXXPPQXXXPXAG 710
A PPP P P P PP PP +G
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISG 1918
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 434 PPPPXFXGGXGGGGXXFP 487
PPPP GG G G FP
Sbjct: 76 PPPPGAEGGPGAGFGGFP 93
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 540 PPPPPPQXXXTXGXKGXXKAKPPPXXGXKPXPPPXGGXPXKXXPPXXPPQ 689
PPPPPPQ + PP PP P P P Q
Sbjct: 206 PPPPPPQQNYPPAAS---SSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQ 252
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 474 PPPPXPPXKXGGGGXF 427
PPPP PP GG F
Sbjct: 947 PPPPPPPLVSAAGGKF 962
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.150 0.525
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,001
Number of Sequences: 5004
Number of extensions: 35867
Number of successful extensions: 291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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