Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D06
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 604 PPPXXGXNPPPPRXGXXPX--KXPPPXXPPXKXP 699
           P P    +P  P+ G  P   + PPP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 771 APRGAXPXXXKKXPPPGPPXXNP 839
           AP+   P    + PPPG P   P
Sbjct: 33  APQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 777 RGAXPXXXKKXPPPGPPXXNP 839
           RG+ P   +  PP GPP   P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +1

Query: 556 PKXXXPXXKRGXXRXNPPPXXGXNPPPPRXGXXPXKXPPPXXPPXKXP 699
           P    P  +    +    P  G +PP P  G  P    PP  PP + P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRG-SPPNPSQGPPPGG--PPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 412 PPGGPPXPP 386
           PPGGPP  P
Sbjct: 47  PPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 541 PPPPPPKXXXP 573
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 479 PXPPPPXPXKXG 444
           P PPPP P   G
Sbjct: 341 PAPPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 538  DPPPPPPK 561
            +PPPPPP+
Sbjct: 1858 EPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 474  PPPPXPPXKXG 442
            PPPP PP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +3

Query: 552  PPQXXXTXGXKGXXKAKPPPXXGXKPXPPPXG 647
            PPQ       +   +AKP      KP P   G
Sbjct: 999  PPQPANAQQGQAQAQAKPQSQEANKPKPATGG 1030


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.150    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,204
Number of Sequences: 438
Number of extensions: 8643
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)